GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001059-TA|BGIBMGA001059-PA|undefined
         (394 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    25   4.8  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   6.3  

>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 25  HTLRYRLPDLDTMAGLRRITLCGNTQLGDAGLTKLLEVLADDL 67
           H   +R+ +L   A    +   G   +GDAGL +++  +AD L
Sbjct: 355 HAANFRM-ELSNSANASLVRAEGQEIVGDAGLARVITDMADVL 396


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 139 AVKDRGTITKNAPSKYLAKSSVVKKEKDYTEVLEEQLQEEISHRQQLEE 187
           +V+DR     N  ++ +A    +KK    TE ++ +L E +  ++ L++
Sbjct: 851 SVEDRKRQLTNCRNEVVATEKRIKKVLTDTEEVDRKLSEALKQQKTLQK 899


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.128    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 310,272
Number of Sequences: 2123
Number of extensions: 9891
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 394
length of database: 516,269
effective HSP length: 65
effective length of query: 329
effective length of database: 378,274
effective search space: 124452146
effective search space used: 124452146
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)