Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001059-TA|BGIBMGA001059-PA|undefined
(394 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 36 0.047
At1g10510.1 68414.m01183 leucine-rich repeat family protein simi... 33 0.33
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont... 31 1.0
At4g15320.1 68417.m02344 cellulose synthase family protein simil... 31 1.3
At4g15290.1 68417.m02341 cellulose synthase family protein simil... 31 1.3
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 31 1.8
At1g74350.1 68414.m08613 intron maturase, type II family protein... 30 3.1
At4g05460.1 68417.m00828 F-box family protein (FBL20) contains s... 29 4.1
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 29 4.1
At1g58520.1 68414.m06653 early-responsive to dehydration protein... 29 4.1
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ... 29 7.1
At5g07140.1 68418.m00814 protein kinase family protein contains ... 29 7.1
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 29 7.1
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 28 9.4
At3g29750.1 68416.m03756 hypothetical protein 28 9.4
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 35.9 bits (79), Expect = 0.047
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 98 VVLDLRHNSEISIESLSKYSWLGNVSGCSNDG-RIKTVVKNGAVKDRGTITKNAPSKYLA 156
V+ LR +E+ + ++K L + C+N G I+ K A KD + SK+ A
Sbjct: 798 VIDSLRKTNEVMNQEMTK---LHSQQRCNNQGTEIERFQK--AAKDASELAARQSSKHKA 852
Query: 157 KSSVVKKEKDYTEVLEEQLQEEISHRQQLEELN 189
+ +K + + L+E+L E+S + E +N
Sbjct: 853 ATEALKSVAEQLKELKEKLPPEVSESEAFESIN 885
>At1g10510.1 68414.m01183 leucine-rich repeat family protein similar
to ribonuclease inhibitor (GI:164639) [Sus scrofa
(pig)]; contains Pfam PF00560: Leucine Rich Repeat
domains
Length = 605
Score = 33.1 bits (72), Expect = 0.33
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 47 GNTQLGDAGLTKLLEVLADDLWIKALDVQNCGLTEATATATLNMMRSNTTLVVLDLRHN 105
G +G G L E+L +K L + C + A +M+R N T+ VLDLR N
Sbjct: 459 GYNPIGPDGAKALSEILKFHGNVKTLKLGWCQIAAKGAEHVADMLRYNNTISVLDLRAN 517
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 37 MAGLRRITLCGNTQLGDAGLTKLLEVLADDLWIKALDVQNCGLTEATATATLNMMRSNTT 96
+ R + + G GD GL L E L + ++ + G+T A A +++SN
Sbjct: 169 LRSFRSVDMSG-CNFGDEGLFFLAESLGYNQTVEEVSFSANGITAAGVKAFDGVLQSNIM 227
Query: 97 LVVLDLRHN 105
L +L+L N
Sbjct: 228 LKILNLSGN 236
>At5g45510.1 68418.m05590 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 1222
Score = 31.5 bits (68), Expect = 1.0
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 30 RLPDLDTMAGLRRITLCGNTQLGDAGLTKLLEVLADD-LWIKALDVQNCGLTEATATATL 88
RLP L ++GL+ + L G T L ++LEV +D L +K L++ L+E T+
Sbjct: 827 RLPSLKPLSGLQILDLSGTT-----SLVEMLEVCFEDKLELKTLNLSGTNLSE--LATTI 879
Query: 89 NMMRSNTTLVVLDLRHNSEI-SIESLSKYSWLGNVSGCSNDGRIK 132
+ S L++ D + I +IE L + +VSG + +I+
Sbjct: 880 EDLSSLNELLLRDCINLDAIPNIEKLENLEVI-DVSGSAKLAKIE 923
>At4g15320.1 68417.m02344 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -2
[gi:9622876], -1 [gi:9622874]
Length = 828
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/103 (22%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 89 NMMRSNTTLVVLDLRHNSEISIESLSKYSWLGNVSGCSNDGRIKTVVKNGAVKDRGTITK 148
N S T +V+ L+H + + + ++G SGC + R+ + + ++D G+++
Sbjct: 419 NFYDSYTNELVV-LQHYMKRGVAGIQGPIYIG--SGCFHTRRVMYGLSSDDLEDDGSLSS 475
Query: 149 NAPSKYLAKSSVVKK---EKDYTEVLEEQLQEEISHRQQLEEL 188
A ++L++ S+V+K K+ + + + LQ + + ++ L L
Sbjct: 476 VASREFLSEDSLVRKYGSSKELVKSVVDALQRKSNPQKSLANL 518
>At4g15290.1 68417.m02341 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -4
[gi:9622880]
Length = 757
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 123 SGCSNDGRIKTVVKNGAVKDRGTITKNAPSKYLAKSSVVKK---EKDYTEVLEEQLQEEI 179
+GC + R+ + + ++D G I++ A ++LA+ S+V+K K+ + + + LQ +
Sbjct: 361 TGCFHTRRVMYGLSSDDLEDNGNISQVATREFLAEDSLVRKYGNSKELVKSVVDALQRKS 420
Query: 180 SHRQQLEEL 188
+ ++ L L
Sbjct: 421 NPQKSLANL 429
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 103 RHNSEISIESLSKYSWLGNVSG-CSNDGRIKTVVKNGAVKDRGTITKNAPSKYLAKSSVV 161
+ N I+ E S + N+ C N G +K A + K++ SK+ A + V+
Sbjct: 1724 KSNGVINKEMTKLQSQIKNLKEKCDNQGTEIQRLKKTAREASDLAVKHS-SKHKAATEVM 1782
Query: 162 KKEKDYTEVLEEQLQEEISHRQQLEELN 189
K ++ L+E+L E+S + E +N
Sbjct: 1783 KSVAEHLRELKEKLPPEVSRCEAFESMN 1810
>At1g74350.1 68414.m08613 intron maturase, type II family protein
similar to maturase [Arabidopsis thaliana] GI:6851020;
contains Pfam profile: PF01348 Type II intron maturase
Length = 753
Score = 29.9 bits (64), Expect = 3.1
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 92 RSNTTLVVLDLRHNSEISIESLSKYSWLGNVSGCSNDGRIKTVVKNGAVKDRGTITKNAP 151
RSN+ L++LD I S W+ GCSN IK ++ N + R + +
Sbjct: 557 RSNSMLILLDTAQI--IDWYSGLVRRWVIWYEGCSNFDEIKALIDN---QIRMSCIRTLA 611
Query: 152 SKYLAKSSVVKKEKDY---TEVLEEQLQEEISHRQ 183
+KY + ++K D T E +++EI H +
Sbjct: 612 AKYRIHENEIEKRLDLELSTIPSAEDIEQEIQHEK 646
>At4g05460.1 68417.m00828 F-box family protein (FBL20) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 302
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 35 DTMAGLRRITLCGNTQLGDAGLTKLLEVLADDLWIKALDVQNC 77
+TM LR + LCGN L D GL +L+ ++ ++ LD++ C
Sbjct: 189 ETMPKLRHLQLCGN-GLSDTGLNAILDNCSN---LEHLDLRRC 227
>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
PF02575: Uncharacterized BCR, YbaB family COG0718
Length = 182
Score = 29.5 bits (63), Expect = 4.1
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 265 CHGQCLVDTANDNNVEETIVNEATEAEMHGYSELRANIVAKKAQSTHVKMLTNAKMTKKM 324
C G+ + T + N ++ I + TEA M SE + +V + + H K + M ++M
Sbjct: 109 CAGELVKVTLSGN--QQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSV--VAMKERM 164
Query: 325 TKSAHLLGDVPG 336
+ A LG PG
Sbjct: 165 SDLAQSLGMPPG 176
>At1g58520.1 68414.m06653 early-responsive to dehydration
protein-related / ERD protein-related low similarity to
ERD4 protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 657
Score = 29.5 bits (63), Expect = 4.1
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 4 ASYIAELVKY-----QKIHRYSENWIHTLRYRLPDLDTMAGLRRITLCGNTQLGDAGLTK 58
+SY++ + Y Q++ R +E TL++ P+++ LR T CG T
Sbjct: 127 SSYVSHQMVYHNGIIQRLLRDAERMCQTLKHVSPEINCKPSLRPCTFCGGPT-----ATS 181
Query: 59 LLEVLADDLWIKALDVQNCGLTEATATATLNMMRSNTTLVVLDLRHNSEISIESL 113
+L+++ A V+ L E T T T + V R+++ + E L
Sbjct: 182 SFHILSNE----ADSVKGMELGELTMTTTTTEQERSAAFVFFKTRYDALVVSEVL 232
>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9Y4I5 Tesmin
(Metallothionein-like 5, testis-specific) {Homo
sapiens}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 408
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 294 GYSELRANIVAKKAQSTHVKMLTNAKMTKKMTKSAHLLGDVPGSQRSRDV 343
G E +A + + T+++ +TNA + + + SA+L ++S+D+
Sbjct: 180 GSEERKALLHGSQVSDTYIQQMTNAAVNRAIDMSAYLYPPESRKRKSKDI 229
>At5g07140.1 68418.m00814 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 583
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 252 AFKDI--YEFIKNNQCHGQCLVDTANDNNVEETIVNEATEAEMHGYSELRANIVAKKAQS 309
A++D+ + + QC+ CL D + VNEA E E GY L I+A +
Sbjct: 441 AYRDLNTQRILLDKQCNA-CLGDLGIVTACKS--VNEAMEYETDGYRWLAPEIIAGDPEK 497
Query: 310 THVKMLTNA 318
T ++NA
Sbjct: 498 TRESWMSNA 506
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 1102
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 113 LSKYSWLGNVSGCSNDGRIKTVVKNGAVKDRG 144
LSK SW+GN++G DG I+ +G + G
Sbjct: 618 LSKLSWVGNITGL-KDGDIEVTWADGTISTVG 648
>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
contains similarity to SKP1 interacting partner 2
GI:10716949 from [Arabidopsis thaliana]; contains Pfam
PF00646: F-box domain
Length = 554
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 40 LRRITLCGNTQLGDAGLTKLLEVLADDLWIKALDVQNCGLTE 81
L R+ LCG+ +GD T+L + L ++ L ++NC +T+
Sbjct: 397 LERLALCGSDTVGD---TELCCIAEKCLALRKLCIKNCPITD 435
>At3g29750.1 68416.m03756 hypothetical protein
Length = 421
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 156 AKSSVVKKEKDYTEVLEEQLQEEISHRQQLEEL 188
AK VVKK+K LEE Q+ + RQ +E+L
Sbjct: 82 AKLDVVKKKKGVINELEELEQDSYTLRQGMEQL 114
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.128 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,252,600
Number of Sequences: 28952
Number of extensions: 245602
Number of successful extensions: 722
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 16
length of query: 394
length of database: 12,070,560
effective HSP length: 83
effective length of query: 311
effective length of database: 9,667,544
effective search space: 3006606184
effective search space used: 3006606184
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)
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