Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001058-TA|BGIBMGA001058-PA|undefined
         (97 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   1.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   4.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          19   9.3  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 61  SDPESEWNGRRSNSESDAEQPEADR 85
           +D  S W  RR N+E+     +A R
Sbjct: 133 NDDPSYWEKRRKNNEAAKRSRDARR 157


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 59  IFSDPESEWNGRRSNSESDAEQPEADRRPHGSAYLAYA 96
           ++S    + +   SNS+ D  +  AD+  + S   A A
Sbjct: 78  LYSSEGQQNSNYSSNSKPDCSKGNADQNGYASVVAAAA 115


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 3  EIYDVTDADTDAVQSPTERDLNKQLEFDNDWSDE 36
          E +++TD D +       + L+K  +    W+D+
Sbjct: 7  EKFEITDYDLNNEFYRGRKKLSKHQQIYGIWADD 40


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.306    0.124    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,886
Number of Sequences: 317
Number of extensions: 616
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 97
length of database: 114,650
effective HSP length: 48
effective length of query: 49
effective length of database: 99,434
effective search space:  4872266
effective search space used:  4872266
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.3 bits)
S2: 37 (19.0 bits)