GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001058-TA|BGIBMGA001058-PA|undefined
         (97 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1545 + 38144624-38145301                                         28   1.0  
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815...    26   4.1  
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440...    25   7.2  
05_06_0266 + 26779191-26779227,26781089-26781218,26781344-26782013     25   7.2  
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584...    25   7.2  
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145...    25   7.2  
01_06_0950 - 33265653-33265802,33265905-33265961,33266046-332661...    25   9.5  

>01_06_1545 + 38144624-38145301
          Length = 225

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 76  SDAEQPEADRRPHGSAYL 93
           SDA +P ADR+P GS Y+
Sbjct: 91  SDAGEPSADRQPFGSMYV 108


>01_06_0213 +
           27580635-27581105,27581206-27581298,27581376-27581540,
           27581640-27581862,27582329-27582429,27582666-27582713,
           27583086-27583172,27583745-27583879,27583985-27584140,
           27585336-27585545,27585641-27586351,27586429-27586974,
           27587872-27588495,27588595-27588699,27590460-27590711,
           27590939-27591766
          Length = 1584

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 57  RNIFSDPESEWNGRRSNSESDAEQPEADRRPHG 89
           +N+ SD E+E     +  + D+E  +AD  P G
Sbjct: 627 QNVISDSEAEKEANDAERDEDSECDDADDDPDG 659


>06_01_0609 +
           4404287-4405023,4405496-4405631,4405724-4405876,
           4405985-4406128,4406224-4406375,4406453-4406552,
           4406653-4406775,4406876-4407037,4407190-4407247,
           4407324-4407502,4408294-4408402,4408567-4408637,
           4408891-4408986,4409727-4409803,4410983-4411066,
           4411473-4411607,4411744-4411819,4413072-4413167,
           4413580-4413671,4413745-4413868,4413966-4414052
          Length = 996

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 70  RRSNSESDAEQPEAD 84
           RR  +ESDAE PEA+
Sbjct: 147 RRDGAESDAEDPEAE 161


>05_06_0266 + 26779191-26779227,26781089-26781218,26781344-26782013
          Length = 278

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 72  SNSESDAEQPEADRRPHGSAYLAYA 96
           ++SES   Q + D +PHG+A  A A
Sbjct: 105 TSSESAVTQVDEDHKPHGAAAAAAA 129


>05_02_0033 +
           5847754-5847982,5848308-5848437,5849038-5849116,
           5849194-5849251,5849732-5850795,5850899-5851003,
           5851369-5851473
          Length = 589

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 12  TDAVQSPTERDLNKQLEFDN 31
           TDA QSPTE++   QL  +N
Sbjct: 513 TDAHQSPTEQEAQTQLAAEN 532


>02_01_0223 +
           1453478-1453750,1455788-1456018,1456066-1456200,
           1457918-1457971,1458417-1458482,1458593-1458679,
           1459338-1459394,1459470-1459500,1459577-1459634,
           1459710-1459761,1459881-1459917,1460008-1460210,
           1460556-1460633,1460683-1460853,1461126-1461239
          Length = 548

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 61  SDPESEWNGRRSNSESDAEQPEADRRPHGSA 91
           S  ESE  G  +NS++D+   E D +  GS+
Sbjct: 333 SGSESESEGSDANSQNDSHSKENDVKEDGSS 363


>01_06_0950 -
           33265653-33265802,33265905-33265961,33266046-33266111,
           33266252-33266317,33266752-33267217,33267313-33267566
          Length = 352

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 62  DPESEWNGRRSNSESDAEQPEADRRPHG 89
           +P   +  + S S  DAEQP+ D R  G
Sbjct: 295 NPLQHFQQKGSESTKDAEQPKPDLRSRG 322


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.306    0.124    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,860
Number of Sequences: 37544
Number of extensions: 76930
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 7
length of query: 97
length of database: 14,793,348
effective HSP length: 70
effective length of query: 27
effective length of database: 12,165,268
effective search space: 328462236
effective search space used: 328462236
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 52 (25.0 bits)