GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001058-TA|BGIBMGA001058-PA|undefined
         (97 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077544-1|AAK39241.2|  231|Caenorhabditis elegans Hypothetical ...    28   1.2  
U64848-13|AAB04890.1|  382|Caenorhabditis elegans Hypothetical p...    27   2.1  
U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical pr...    26   3.6  
AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    26   3.6  
U41279-11|AAK31420.1|  146|Caenorhabditis elegans Hypothetical p...    25   6.3  
AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    25   6.3  
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    25   6.3  

>AF077544-1|AAK39241.2|  231|Caenorhabditis elegans Hypothetical
          protein H22K11.3 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 63 PESEWNGRRSNSESDAEQPEADRRPHGS 90
          P   WNG  SN  S  +QP  D    GS
Sbjct: 68 PMGNWNGPNSNGYSGPQQPPPDNSIKGS 95


>U64848-13|AAB04890.1|  382|Caenorhabditis elegans Hypothetical
          protein C50E3.12 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 62 DPESEWNGRRSNSESDAEQPEADRRPH 88
          +P  E +GR+SN+E  +E+P      H
Sbjct: 29 EPAEEQSGRQSNAEDGSEEPNVGGSEH 55


>U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical
           protein F37A4.6 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 24  NKQLEFDNDWSDEL-ITSNXXXXXXXXXXXXXXXRNIFSDPESEWNGRRSNSESDAEQPE 82
           +KQL FDND  DE   T +               RN+   P        S   SDAE  E
Sbjct: 182 SKQLHFDNDDGDEEDDTDDEGEADLVSIKTRSGRRNVLKSPPPPERIPSSMGASDAE--E 239

Query: 83  ADRRPH 88
            D + H
Sbjct: 240 IDIKSH 245


>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 11  DTDAVQSPTERDLNKQLEFDNDWSDELITSNXXXXXXXXXXXXXXXRNIFSDPESEWNGR 70
           D+D  +   E D +K+ + D+D  D +                     +F D  SE +G 
Sbjct: 673 DSDDEEEEEENDDDKENQ-DDDTHDIVDWDKLDESDEDEDELKDRKHGLFDDEASESDGE 731

Query: 71  RSNSESDAEQPEAD 84
               + D E+PE +
Sbjct: 732 DEFEDEDEEEPEGE 745


>U41279-11|AAK31420.1|  146|Caenorhabditis elegans Hypothetical
           protein C17C3.6 protein.
          Length = 146

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 15  VQSPTERDLNKQLEFDNDWSD 35
           +  PT  D+N  LE D+ W D
Sbjct: 81  LHQPTSLDMNFSLELDDSWVD 101


>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 4   IYDVTDADTDAVQSPTERDLNKQLEFDNDWSDELITSN 41
           + D++D D D + S  E    + L   N+W+D+ +T++
Sbjct: 434 VQDLSD-DVDVILSKMEVGAKRYLVVRNEWADKNLTTD 470


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 4   IYDVTDADTDAVQSPTERDLNKQLEFDNDWSDELITSN 41
           + D++D D D + S  E    + L   N+W+D+ +T++
Sbjct: 637 VQDLSD-DVDVILSKMEVGAKRYLVVRNEWADKNLTTD 673


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.306    0.124    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,698
Number of Sequences: 27539
Number of extensions: 68826
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 7
length of query: 97
length of database: 12,573,161
effective HSP length: 70
effective length of query: 27
effective length of database: 10,645,431
effective search space: 287426637
effective search space used: 287426637
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 52 (25.0 bits)