GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001058-TA|BGIBMGA001058-PA|undefined
         (97 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12020.1 68417.m01912 protein kinase family protein similar t...    29   0.64 
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340...    27   1.5  
At4g12620.1 68417.m01988 replication control protein, putative s...    26   3.4  
At4g31060.1 68417.m04410 AP2 domain-containing transcription fac...    26   4.5  
At2g28940.2 68415.m03518 protein kinase family protein contains ...    25   6.0  
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ...    25   7.9  

>At4g12020.1 68417.m01912 protein kinase family protein similar to
           mitogen-activated protein kinase [Arabidopsis thaliana]
           GI:1255448; contains Pfam profiles PF02671: Paired
           amphipathic helix repeat, PF03106: WRKY DNA-binding
           domain, PF00560: Leucine Rich Repeat, PF00069: Protein
           kinase domain, PF00931: NB-ARC domain
          Length = 1798

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 61  SDPESEWNGRRSNSESDAEQPEADRR 86
           SD E + NG  S  E D ++PE  RR
Sbjct: 582 SDNEEDSNGETSEGEKDEDEPEPKRR 607


>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
          Protein of unknown function (DUF740)
          Length = 521

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 5  YDVTDADTDAVQSPTERDLNKQLEFDNDWSDELITSN 41
          Y V DA    +  P  R  + +   D+D  DEL+ S+
Sbjct: 60 YSVRDASASVLDQPRRRSCDVRSNHDDDDDDELLKSS 96


>At4g12620.1 68417.m01988 replication control protein, putative
           similar to origin recognition complex subunit 1
           (Replication control protein 1)[Homo sapiens]
           SWISS-PROT:Q13415
          Length = 813

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 61  SDPESEWNGRRSNSESDAEQ 80
           SD + EWNGR+     D+++
Sbjct: 351 SDSDQEWNGRKEEEVDDSDE 370


>At4g31060.1 68417.m04410 AP2 domain-containing transcription
           factor, putative TINY, Arabidopsis thaliana, PID:E218696
          Length = 187

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 3   EIYDVTDADTDAVQSPTERDLNKQLEFDNDWSDELI 38
           E Y  TDA  +++ S  +  L+  L  D DW + LI
Sbjct: 152 EYYLPTDATAESIFSVEDLQLDSFLMMDIDWINNLI 187


>At2g28940.2 68415.m03518 protein kinase family protein contains
          protein kinase domain, Pfam:PF00069
          Length = 462

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 14 AVQSPTERDLNKQLEFDNDWS 34
          +V S T  D  ++ EFD+DWS
Sbjct: 41 SVASSTTSDPTRRSEFDSDWS 61


>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain; ESTs gb|T44428 and gb|AA395440 come from this
           gene
          Length = 1218

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 60  FSDPESEWNGRRSNSESDAEQPE 82
           FSD +S+   ++S+ E D+EQ E
Sbjct: 816 FSDADSKTGKKQSSGEEDSEQSE 838


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.306    0.124    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,195
Number of Sequences: 28952
Number of extensions: 64481
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 6
length of query: 97
length of database: 12,070,560
effective HSP length: 70
effective length of query: 27
effective length of database: 10,043,920
effective search space: 271185840
effective search space used: 271185840
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 52 (25.0 bits)