Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001057-TA|BGIBMGA001057-PA|undefined
         (58 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    29   0.097
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    23   4.8  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 28.7 bits (61), Expect = 0.097
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 11   NLLQQLHGFVYTSHDRSEAAARIYYKLTT 39
            N LQQ+H  V+TS D   +   +YY+L T
Sbjct: 1183 NTLQQIH--VHTSSDGKSSETEVYYRLQT 1209


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 6   WKLSLNLLQQLHGFVYTSHDRS 27
           W+ +L  LQ + GF+ T  +R+
Sbjct: 136 WRRNLAQLQDVEGFIVTPFERN 157


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.125    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,365
Number of Sequences: 5004
Number of extensions: 5856
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 58
length of database: 2,362,478
effective HSP length: 39
effective length of query: 19
effective length of database: 2,167,322
effective search space: 41179118
effective search space used: 41179118
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)