Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001057-TA|BGIBMGA001057-PA|undefined
         (58 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacti...    27   2.1  
AF100304-3|AAP82634.1|  542|Caenorhabditis elegans Gex interacti...    27   2.1  
AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacti...    27   2.1  
AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacti...    27   2.1  
AL031634-3|CAA21036.1|  556|Caenorhabditis elegans Hypothetical ...    25   6.3  

>AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacting
           protein protein4, isoform b protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 26  RSEAAARIYYKLTTEAKRETNEGHLLERRTKK 57
           ++EAA   Y++L+ E KRE N    L ++ K+
Sbjct: 152 QAEAARMRYHRLSNEEKRELNLKRTLAQKRKR 183


>AF100304-3|AAP82634.1|  542|Caenorhabditis elegans Gex interacting
           protein protein4, isoform c protein.
          Length = 542

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 26  RSEAAARIYYKLTTEAKRETNEGHLLERRTKK 57
           ++EAA   Y++L+ E KRE N    L ++ K+
Sbjct: 152 QAEAARMRYHRLSNEEKRELNLKRTLAQKRKR 183


>AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacting
           protein protein4, isoform f protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 26  RSEAAARIYYKLTTEAKRETNEGHLLERRTKK 57
           ++EAA   Y++L+ E KRE N    L ++ K+
Sbjct: 148 QAEAARMRYHRLSNEEKRELNLKRTLAQKRKR 179


>AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacting
           protein protein4, isoform a protein.
          Length = 545

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 26  RSEAAARIYYKLTTEAKRETNEGHLLERRTKK 57
           ++EAA   Y++L+ E KRE N    L ++ K+
Sbjct: 129 QAEAARMRYHRLSNEEKRELNLKRTLAQKRKR 160


>AL031634-3|CAA21036.1|  556|Caenorhabditis elegans Hypothetical
           protein Y32B12C.3 protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 18  GFVYTSHDRSEAAARIYYKLTTEAK----RETNEGHLLERRTKK 57
           G+     + +E+ ++IY  + T  K     ET+EGH  +R TK+
Sbjct: 277 GYSSKLEEVNESLSKIYENVKTYGKCCVDEETSEGHAWDRFTKE 320


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.125    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,030
Number of Sequences: 27539
Number of extensions: 29457
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 5
length of query: 58
length of database: 12,573,161
effective HSP length: 39
effective length of query: 19
effective length of database: 11,499,140
effective search space: 218483660
effective search space used: 218483660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)