GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001057-TA|BGIBMGA001057-PA|undefined
         (58 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    25   0.079
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    19   3.9  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    19   3.9  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 0.079
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 20  VYTSHDRSEAAARIYYK--LTTEAKRE-TNEGHLLERRTK 56
           VYT H R E     YY   +T   K E  N   L ER+ K
Sbjct: 162 VYTDHQRVELEKEFYYSRYITIRRKAELANSLGLSERQVK 201


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 32  RIYYKLT 38
           RIYYKLT
Sbjct: 167 RIYYKLT 173


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 1   MSKSVWKLSLNLLQQLHGFVYTSHDR 26
           +++  W+L  N  QQ+     T  DR
Sbjct: 99  LNQDKWRLLNNNFQQIDKIFKTRDDR 124


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.125    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,822
Number of Sequences: 317
Number of extensions: 334
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 58
length of database: 114,650
effective HSP length: 38
effective length of query: 20
effective length of database: 102,604
effective search space:  2052080
effective search space used:  2052080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.4 bits)
S2: 34 (17.8 bits)