GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001057-TA|BGIBMGA001057-PA|undefined
         (58 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0004 - 12165074-12165334,12165405-12165489,12165584-12165957     26   3.4  
09_03_0092 + 12306991-12307323,12308302-12308339,12308465-123092...    26   4.4  

>12_02_0004 -
          12165074-12165334,12165405-12165489,12165584-12165957
          Length = 239

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 36 KLTTEAKRETNEGHLLERRTKK 57
          ++TT AKRE N  +L E R +K
Sbjct: 18 EITTSAKREQNNSYLREWRARK 39


>09_03_0092 +
           12306991-12307323,12308302-12308339,12308465-12309244,
           12309386-12309875
          Length = 546

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 8   LSLNLLQQLHGFVYTSHDRSEAAARIYYKLTTEAKRETNEGHLLE 52
           +   +   ++ F+Y S+ R    AR+   + +E ++   EG  LE
Sbjct: 457 IPFTICTSIYSFLYCSYPRDRERARMQSLIESELQQMEQEGSCLE 501


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.125    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,681
Number of Sequences: 37544
Number of extensions: 34236
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 2
length of query: 58
length of database: 14,793,348
effective HSP length: 38
effective length of query: 20
effective length of database: 13,366,676
effective search space: 267333520
effective search space used: 267333520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)