GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001057-TA|BGIBMGA001057-PA|undefined
         (58 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   0.91 
SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.8  
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.4  

>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 9   SLNLLQQLHGFVYTSHDRSEAAARI---YYKLTTEAKRETNEGHLLERRTKKS 58
           S  L+ Q H FVYT+   S +  R+   +YK+T  + R   + H+L   T+ S
Sbjct: 137 STQLVLQDHMFVYTTRS-SRSHVRLHNSFYKITCSSTRLVLQDHMLVYTTRSS 188


>SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 23  SHDRSEAAARIYYKLTTEAKRETNEGHLLERRTKK 57
           S+DRS     + Y + T+ K+ T+  H+L R  +K
Sbjct: 85  SNDRSMTMYNLNYSMRTDYKKTTDISHVLLRSREK 119


>SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 9   SLNLLQQLHGFVYTSHDRSEAAARIYYKLTTEAK 42
           SL++  +LHG+ Y     SEA  ++   L  +AK
Sbjct: 262 SLDIFNELHGWKYKVFSVSEANEKLQQDLVKQAK 295


>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1082

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 7   KLSLNLLQQLHGFVYTSHDRSEAAARIYYKLTTEAKRETNEGHLLERRTK 56
           +LSL  ++  H          E    I+ K+    +R TN G ++ER  K
Sbjct: 249 ELSLEEMEHGHSSYIKKSKLEEKCNEIWNKICFLQRRPTNTGRVVEREVK 298


>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 8   LSLNLLQQLHGFVYTSHDRSEAAARIYYKLTTEAKRETNEGHLLERRTKKS 58
           + LNLLQ L     T+H  + +  R+       A+R+    + ++R TK++
Sbjct: 100 IELNLLQTLTSCNGTAHPHATSTLRLMSGQAANAERQERIFNSIKRITKQT 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.125    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,657
Number of Sequences: 59808
Number of extensions: 39323
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 5
length of query: 58
length of database: 16,821,457
effective HSP length: 38
effective length of query: 20
effective length of database: 14,548,753
effective search space: 290975060
effective search space used: 290975060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)