GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001057-TA|BGIBMGA001057-PA|undefined
         (58 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ583822-1|CAE47749.1|  327|Homo sapiens ubiquitin specific prot...    30   1.00 
AJ586979-1|CAE52971.1|  306|Homo sapiens ubiquitin-specific prot...    29   2.3  
X15525-1|CAA33542.1|  423|Homo sapiens acid phosphatase protein.       29   3.0  
X12548-1|CAA31064.1|  423|Homo sapiens protein ( Human mRNA for ...    29   3.0  
BC093010-1|AAH93010.1|  423|Homo sapiens acid phosphatase 2, lys...    29   3.0  
BC003160-1|AAH03160.1|  423|Homo sapiens acid phosphatase 2, lys...    29   3.0  

>AJ583822-1|CAE47749.1|  327|Homo sapiens ubiquitin specific
           proteinase 41 protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 3   KSVWKLSLNL-LQQLHGFVYTSHDRSEAAARIYYKLTTEAKRETNEGHLLER 53
           K+VW L L   LQ+ +  V+  HD    AA++Y KL    K +  + HL+ER
Sbjct: 85  KAVWPLELAYCLQKYNVPVFVQHD----AAQLYLKLWNLIKDQIADVHLVER 132


>AJ586979-1|CAE52971.1|  306|Homo sapiens ubiquitin-specific
           protease 41 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 3   KSVWKLSLNL-LQQLHGFVYTSHDRSEAAARIYYKLTTEAKRETNEGHLLER 53
           K+VW L L   LQ+ +  ++  HD    AA++Y KL    K +  + HL+ER
Sbjct: 64  KAVWPLELAYCLQKYNVPLFVQHD----AAQLYLKLWNLIKDQIADVHLVER 111


>X15525-1|CAA33542.1|  423|Homo sapiens acid phosphatase protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 6   WKLSLNLLQQLHGFVYTSHDRSEAAAR 32
           W+L   L Q+ HGF+ TS+ R E   R
Sbjct: 77  WELGQALRQRYHGFLNTSYHRQEVYVR 103


>X12548-1|CAA31064.1|  423|Homo sapiens protein ( Human mRNA for
           lysosomal acid phosphatase (EC 3.1.3.2). ).
          Length = 423

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 6   WKLSLNLLQQLHGFVYTSHDRSEAAAR 32
           W+L   L Q+ HGF+ TS+ R E   R
Sbjct: 77  WELGQALRQRYHGFLNTSYHRQEVYVR 103


>BC093010-1|AAH93010.1|  423|Homo sapiens acid phosphatase 2,
           lysosomal protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 6   WKLSLNLLQQLHGFVYTSHDRSEAAAR 32
           W+L   L Q+ HGF+ TS+ R E   R
Sbjct: 77  WELGQALRQRYHGFLNTSYHRQEVYVR 103


>BC003160-1|AAH03160.1|  423|Homo sapiens acid phosphatase 2,
           lysosomal protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 6   WKLSLNLLQQLHGFVYTSHDRSEAAAR 32
           W+L   L Q+ HGF+ TS+ R E   R
Sbjct: 77  WELGQALRQRYHGFLNTSYHRQEVYVR 103


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.314    0.125    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,120,038
Number of Sequences: 224733
Number of extensions: 156028
Number of successful extensions: 288
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 6
length of query: 58
length of database: 73,234,838
effective HSP length: 38
effective length of query: 20
effective length of database: 64,694,984
effective search space: 1293899680
effective search space used: 1293899680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)