GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001057-TA|BGIBMGA001057-PA|undefined
         (58 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp...    28   0.90 
At2g36650.1 68415.m04495 expressed protein                             27   1.2  
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    25   6.4  
At2g07708.1 68415.m00958 expressed protein                             25   8.4  

>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 930

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 21  YTSHDRSEAAARIYYKLTTEAKRETNEGHLLERRTKKS 58
           Y S D+  + +R   + ++  KR +++ H   RRTKKS
Sbjct: 870 YHSRDKQGSRSRSKRRESSREKRSSHKKHSKHRRTKKS 907


>At2g36650.1 68415.m04495 expressed protein
          Length = 373

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 24  HDRSEAAARIYYKLTTEAKRETNEGHLLERRTKK 57
           H R +A   +Y KL  E +   +E  LLE + KK
Sbjct: 140 HKRGQALVIVYLKLVGEIQELRSENGLLEGKAKK 173


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1544

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 6   WKLSLNLLQQLHGFVYTSHDRSEAAAR 32
           W+ +LN++  + GFVY S   S   ++
Sbjct: 142 WRRALNIIGNIPGFVYRSEMESGVVSK 168


>At2g07708.1 68415.m00958 expressed protein
          Length = 141

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 5  VWKLSLNLLQQLHGF--VYTSHDRSEAAARIYYKLTTE 40
          VWK S+N L  +HG+  +Y  + R     R+   +  E
Sbjct: 27 VWKYSMNTLCTMHGWMKLYLEYQRWNCMLRLSASIELE 64


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.125    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,174,346
Number of Sequences: 28952
Number of extensions: 28279
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 4
length of query: 58
length of database: 12,070,560
effective HSP length: 38
effective length of query: 20
effective length of database: 10,970,384
effective search space: 219407680
effective search space used: 219407680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)