Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001056-TA|BGIBMGA001056-PA|IPR002641|Patatin
         (341 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.2  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    22   7.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 133 VMASCFVPVFSGLLPPRFHGIRYM 156
           ++A C  P  +  L  RFH IRYM
Sbjct: 368 MIADCESPPAADELLRRFHEIRYM 391


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 51  LPIGEITSDVLRVVREARSGSLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLT 110
           LP+     ++ + +RE   G L  + P + +    L       PED   ++S   H+  +
Sbjct: 53  LPLYTSAENIFKQLREW--GRL--YYPIYKLNAAHLAAANILSPEDCELVLSNPTHMEKS 108

Query: 111 RVYD 114
            +Y+
Sbjct: 109 AIYN 112


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 48   LCDLPIGEITSDVLR 62
            LC  PI E+T D LR
Sbjct: 1323 LCSKPIDEMTVDELR 1337


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 48   LCDLPIGEITSDVLR 62
            LC  PI E+T D LR
Sbjct: 1323 LCSKPIDEMTVDELR 1337


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,999
Number of Sequences: 317
Number of extensions: 3589
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 4
length of query: 341
length of database: 114,650
effective HSP length: 57
effective length of query: 284
effective length of database: 96,581
effective search space: 27429004
effective search space used: 27429004
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)