Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001056-TA|BGIBMGA001056-PA|IPR002641|Patatin
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54271| Best HMM Match : Patatin (HMM E-Value=7.2e-25)              261   5e-70
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)               54   1e-07
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       40   0.004
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)               29   5.5  
SB_22180| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_54271| Best HMM Match : Patatin (HMM E-Value=7.2e-25)
          Length = 337

 Score =  261 bits (640), Expect = 5e-70
 Identities = 129/247 (52%), Positives = 168/247 (68%), Gaps = 4/247 (1%)

Query: 2   NLSFAGCGFLGIYHVGVAVCFKKYAPHLL--LGKISGASFGALSACCLLCDLPIGEITSD 59
           NL+F+GCGFLGIYH+GV  C K  AP  L  +    GAS G+ ++  LL DL I E +  
Sbjct: 7   NLTFSGCGFLGIYHLGVVSCMKDNAPSFLAKVKCFGGASAGSFASTALLMDLNIAESSEF 66

Query: 60  VLRVVREARSGSLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRVYDGKNVI 119
           VLR+ + AR+ +LGP  P+F I   L    EK LPE+AH++ SG+LHISLTRV D  N+I
Sbjct: 67  VLRLAKRARTLTLGPLHPNFRILQTLRRSFEKILPENAHELASGRLHISLTRVSDFTNLI 126

Query: 120 VSEFPTREDLLQAVMASCFVPVFSGLLPPRFHGIRYMDGGFSDNLP--VLDENTITVSPF 177
           VSEF ++EDL++A+MAS  VP +SG+LP +F G  Y+DGG SDNLP    +  TITVSPF
Sbjct: 127 VSEFHSKEDLIEALMASSHVPFYSGILPAKFRGTYYIDGGLSDNLPQHFTEGETITVSPF 186

Query: 178 CGESDICPRDLSSQLFHVNLANTSIELSKQNMNRFARILFPPKPEVLSNMCKQGFDDALR 237
            GESDICP D S    H ++ NTS++ + QN+ R +R  FPP+ EVL  MCKQG+ D +R
Sbjct: 187 SGESDICPNDGSPNFAHFDIRNTSVQFTLQNLYRCSRAFFPPEAEVLVEMCKQGYRDTMR 246

Query: 238 FLHRNNL 244
           FL  + L
Sbjct: 247 FLQTHLL 253


>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
          Length = 385

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 178 CGESDICPRDLSSQLFHVNLANTSIELSKQNMNRFARILFPPKPEVLSNMCKQGFDDALR 237
           CG+SDICP D S  +      N S+ L+K N  R   IL+PP  +    + + G+ DA+ 
Sbjct: 318 CGDSDICPEDSSRVMAEFKWRNMSVSLNKDNAMRTQHILYPPNQQAFDKLYQAGYKDAVN 377

Query: 238 FLHRNNL 244
           ++    L
Sbjct: 378 YVTTKGL 384


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 23/88 (26%), Positives = 38/88 (43%)

Query: 160  FSDNLPVLDENTITVSPFCGESDICPRDLSSQLFHVNLANTSIELSKQNMNRFARILFPP 219
            F D+    D  T    P  G+  IC       +  ++  + S+  SK+N+  F +   PP
Sbjct: 1713 FVDSTSENDVFTAVDEPNDGQEAICESTSDHCMETISKKDISLRSSKENLQNFRKPPIPP 1772

Query: 220  KPEVLSNMCKQGFDDALRFLHRNNLISC 247
            KP+  +    QG     R + + N I+C
Sbjct: 1773 KPDFKTQHASQGVSLISRNIQQGNHINC 1800


>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
          Length = 1890

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 50   DLPIGEITSDVLRVVREARSGSLGPFSP 77
            +L +G +TS  + + RE+RS +  P SP
Sbjct: 1074 NLAVGNVTSAAVHMTRESRSATSSPLSP 1101


>SB_22180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 77  PSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRVYDGKNVI 119
           P F +Q+  L+ +   +P  A +I SG++ I   R+Y    V+
Sbjct: 2   PRFEVQSARLQQVTSPIPSPAMQIRSGRMPILCLRLYSDYGVL 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,371
Number of Sequences: 59808
Number of extensions: 513328
Number of successful extensions: 1297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 5
length of query: 341
length of database: 16,821,457
effective HSP length: 83
effective length of query: 258
effective length of database: 11,857,393
effective search space: 3059207394
effective search space used: 3059207394
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)