Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001056-TA|BGIBMGA001056-PA|IPR002641|Patatin
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33270.1 68414.m04114 patatin-related contains Patatin domain...    66   2e-11
At1g33270.2 68414.m04115 patatin-related contains Patatin domain...    65   7e-11
At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase...    33   0.21 
At3g60430.1 68416.m06759 hypothetical protein                          32   0.63 
At2g26440.1 68415.m03172 pectinesterase family protein contains ...    28   7.8  

>At1g33270.1 68414.m04114 patatin-related contains Patatin domain
           PF01734
          Length = 369

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 33/251 (13%)

Query: 4   SFAGCGFLGIYHVGVAVCFKKYAPHLLLGKISGASFGALSACCLLCDLPIGEITSDVLRV 63
           SF+  G L  YH+GVA    +         ++G+S GA+    +     + E       +
Sbjct: 121 SFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIVCAVITSGATMREALEATKEL 180

Query: 64  VREARSGSLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRVY-DGKNVIVSE 122
             + R         +F +  VL E ME+ LP+D H   +G++ +++T+V+   + ++V +
Sbjct: 181 AYDCRRNGT-----AFRLGAVLRESMERLLPDDIHIRSNGRIRVAITQVFWRPRGLLVDQ 235

Query: 123 FPTREDLLQAVMASCFVPVFSGLLPPR----FHGIRYMDGGFSDNL-PVLDENTITVSPF 177
           F ++ DL+ AV  S F+P   G L PR    F     +DGG +  + P     T+ V  F
Sbjct: 236 FDSKSDLIDAVFTSSFIP---GYLAPRPATMFRNRLCVDGGLTLFMPPTAAAKTVRVCAF 292

Query: 178 CGES------DICPRDLSSQLFHVNLANTSIELSKQNMNRFARILFPPKPEVLSNMCKQG 231
              +      +ICP          N  N +   S+Q +N     L P + EVL  + + G
Sbjct: 293 SASNFKLKGIEICP--------DCNPLNRA--TSRQLLN---WALEPAEDEVLERLFELG 339

Query: 232 FDDALRFLHRN 242
           + DA  +   N
Sbjct: 340 YADAATWAEMN 350


>At1g33270.2 68414.m04115 patatin-related contains Patatin domain
           PF01734
          Length = 287

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 4   SFAGCGFLGIYHVGVAVCFKKYAPHLLLGKISGASFGALSACCLLCDLPIGEITSDVLRV 63
           SF+  G L  YH+GVA    +         ++G+S GA+    +     + E       +
Sbjct: 121 SFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIVCAVITSGATMREALEATKEL 180

Query: 64  VREARSGSLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRVY-DGKNVIVSE 122
             + R         +F +  VL E ME+ LP+D H   +G++ +++T+V+   + ++V +
Sbjct: 181 AYDCRRNGT-----AFRLGAVLRESMERLLPDDIHIRSNGRIRVAITQVFWRPRGLLVDQ 235

Query: 123 FPTREDLLQAVMASCFVPVFSGLLPPR----FHGIRYMDGGFSDNLP 165
           F ++ DL+ AV  S F+P   G L PR    F     +DGG +  +P
Sbjct: 236 FDSKSDLIDAVFTSSFIP---GYLAPRPATMFRNRLCVDGGLTLFMP 279


>At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK3) similar to NPK2 [Nicotiana
           tabacum] gi|862342|dbj|BAA06731; mitogen-activated
           protein kinase kinase (MAPKK) family, PMID:12119167
          Length = 520

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 97  AHKIVSGKLHISLTRVYDGKNVIVSEFPTREDLLQAVMASCFVPVFSGLLPPRFHGIRYM 156
           A  +V   +HI   R+   K + + E   R+ LL  +   C  P   GL+   FHG  Y 
Sbjct: 93  ASSVVQRAIHIPNHRILALKKINIFEREKRQQLLTEIRTLCEAPCHEGLVD--FHGAFYS 150

Query: 157 DGGFSDNLPVLDENTITVSPFCGESDICPRDLSSQLFHVNLANTS 201
                 ++ +   N  +++     +   P  + S LFH  L   S
Sbjct: 151 PDSGQISIALEYMNGGSLADILKVTKKIPEPVLSSLFHKLLQGLS 195


>At3g60430.1 68416.m06759 hypothetical protein
          Length = 258

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 270 YDPDCEECKTHRQDALVDDLPDTV---MTIFQNAIDSANNGIVNWVMKQRAVRYL--NLL 324
           +D    E +    D +VD   D V   M  ++  ++S NN  VN V K  A +Y   NLL
Sbjct: 138 FDFKISELEAMFPDGMVDHNVDPVYKEMPQWEETLESCNNRYVNLV-KTLADKYPCENLL 196

Query: 325 TLPYRVPIDIMYATFTK 341
            + +R  +   YATF K
Sbjct: 197 LVTHREGVSFTYATFYK 213


>At2g26440.1 68415.m03172 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 547

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 56  ITSDVLRVVREARS--GSLGPFSPSFNIQNVLLEGMEKYLPE--DAHKIVSGKLHISLTR 111
           I S +L+ ++ A S  G L        + N L+EG    L +  D H I S  L  S+++
Sbjct: 66  ILSFLLQTLQTALSEAGKLTDLLSGAGVSNNLVEGQRGSLQDCKDLHHITSSFLKRSISK 125

Query: 112 VYDGKN 117
           + DG N
Sbjct: 126 IQDGVN 131


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,539,626
Number of Sequences: 28952
Number of extensions: 373693
Number of successful extensions: 1012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1006
Number of HSP's gapped (non-prelim): 5
length of query: 341
length of database: 12,070,560
effective HSP length: 82
effective length of query: 259
effective length of database: 9,696,496
effective search space: 2511392464
effective search space used: 2511392464
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)