Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001056-TA|BGIBMGA001056-PA|IPR002641|Patatin
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 29 0.95
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 29 1.3
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 28 2.2
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 27 5.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 5.1
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 26 6.7
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 26 6.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 8.9
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 26 8.9
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 29.1 bits (62), Expect = 0.95
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 75 FSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRVYDGKNVIVSEFPTREDLLQAV 133
F+P + Q +++G + + ++ SG ++ YDG+ ++VS F R L + V
Sbjct: 1185 FAPRYG-QRAVVKGKDNDTVVELYETQSGNYVLAARLSYDGETIVVSMFENRNALKKEV 1242
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 254 QSTFQLQDVLDDTTYDYDPDCEECKTHRQDAL--VDDLPDTVMTIFQNA--IDSANNGIV 309
+S ++ D+ + ++ D + K R A+ +DD+ T+ TI + ++S N G++
Sbjct: 217 KSACEIHDLKESDSFK-DHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLI 275
Query: 310 NWVMKQR 316
N VM R
Sbjct: 276 NEVMDMR 282
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 177 FCGESDICPRDLSSQLFHVNLA--NTSIELSKQNMNRFARILFPPKPEVLSNMCKQGFDD 234
FC + + + ++ H L N+SI L K+ F LFPP + N+ K+ F D
Sbjct: 229 FCTQIAVFHQSKNNAASHCFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFD 288
Query: 235 AL 236
L
Sbjct: 289 HL 290
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 3 LSFAGCGFLGIYHVGVAVCF--KKYAPHLLLGKISGASFGAL 42
L F G G+YH GVA + P +L G SGA +L
Sbjct: 182 LYFNGGTAFGLYHFGVAKTLWKRNLLPQILAGCASGALIASL 223
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 165 PVLDENTITVSPFCGESDICPRDLSSQLFHVNLANTSIELSKQNMNRFARILFPPKPEVL 224
P++ EN I+ + E I P++LS+ L L N + + N R P P +
Sbjct: 192 PIVSENPISATSVSIEIPIKPKELSNNLPFPRLNNNNTNNNNDNNAIEKRDSASPTPSSV 251
Query: 225 SNMCKQGF 232
S+ F
Sbjct: 252 SSQISIDF 259
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 18 VAVCFKKYAPHLLLGKISGASFGALSACC-LLCDLPIGEITSDVL 61
+A+C A +L LGK FG C C P+ SD L
Sbjct: 22 LAICTPPLANNLTLGKYGDVRFGVFGYCLNSNCSKPLVGYNSDYL 66
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 26.2 bits (55), Expect = 6.7
Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 130 LQAVMAS--CFVPVFSGLLPPRFHGIRYMDGGFSDNLPV 166
L A+MA CFVP S LL P F I + G SDNL V
Sbjct: 785 LSAIMAQSGCFVPAKSALL-PIFDSI-LIRMGSSDNLSV 821
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 33 KISGASFGALSACCLLCDLPIGEITSDVLRVVREARSGSLGPFSPSFNIQNVLLEGMEKY 92
KIS F +S+CC D+ I E SG++ F+ + + + + G K
Sbjct: 443 KISDVLFSKISSCCFAHDIEISE---------NSTPSGTMVQFAELWQVMSEYISGFLKG 493
Query: 93 LPEDAHKIVSGKL 105
E + +S L
Sbjct: 494 FSEKSSTEISNML 506
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 227 MCKQGFDDALRFL--HRNNLISCTRCLAVQSTFQLQDVL 263
+ +Q + +R L L+S +RCLA+Q FQ Q+ +
Sbjct: 452 LLRQSYPMTIRLLGVRATKLVSKSRCLAMQLKFQSQNTV 490
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.140 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,109
Number of Sequences: 5004
Number of extensions: 72575
Number of successful extensions: 231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 10
length of query: 341
length of database: 2,362,478
effective HSP length: 73
effective length of query: 268
effective length of database: 1,997,186
effective search space: 535245848
effective search space used: 535245848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)
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