Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001056-TA|BGIBMGA001056-PA|IPR002641|Patatin
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0033 - 19437746-19437916,19438063-19438145,19438266-194383... 71 1e-12
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 33 0.44
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20... 33 0.44
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 30 2.3
01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963... 29 5.4
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575 29 7.1
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 29 7.1
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 28 9.4
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 28 9.4
>11_06_0033 -
19437746-19437916,19438063-19438145,19438266-19438359,
19438478-19438551,19438825-19438861,19440767-19440844,
19440927-19441022,19441719-19441815,19441910-19442015,
19442136-19442208,19442537-19442680,19443241-19443681
Length = 497
Score = 70.9 bits (166), Expect = 1e-12
Identities = 43/164 (26%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Query: 4 SFAGCGFLGIYHVGVAVCFKKYAPHLLLGKISGASFGALSACCLLCDLPIGEITSDVLRV 63
SF+ G L YH+GVA C ++G+S GA+ C ++ G D L+V
Sbjct: 122 SFSAAGLLFPYHIGVAQCLIDRGYLTERTPLAGSSAGAI-ICAVIAS---GNTMRDALQV 177
Query: 64 VREARSGSLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRV-YDGKNVIVSE 122
++ +F + VL + ++++LP+D H +G++ +++T++ + + ++V +
Sbjct: 178 TKDLADNCRSN-GTAFRLGAVLKDVLDRFLPDDVHIRCNGRIRVAITQLSWRPRGLLVDQ 236
Query: 123 FPTREDLLQAVMASCFVPVFSGLLPPRFHGIRY-MDGGFSDNLP 165
F +++D++ AV+ S F+P + P F R +DGG + +P
Sbjct: 237 FDSKDDVISAVITSSFIPGYLAPRPATFFRNRLCIDGGLTLFMP 280
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 32.7 bits (71), Expect = 0.44
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 53 IGEITSDVLRVVREARSG-SLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTR 111
I IT +V R++RE+R G L P F + NVL+ Y PE KI +I++ R
Sbjct: 1467 IEPITKNVKRIIRESRDGIKLPPDDEKFIVTNVLM-----YHPERKKKIAGNGNYITVDR 1521
Query: 112 --VYDGKN--VIVSEFPTRED 128
V+ G ++S +R+D
Sbjct: 1522 HQVFHGSRCLYVMSSDGSRKD 1542
>01_01_0026 +
201042-201110,201252-201359,202511-202639,203164-203440,
203543-203647,203730-203875,204042-204149,204290-204378,
204552-205098
Length = 525
Score = 32.7 bits (71), Expect = 0.44
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 183 ICPRDLSSQLFHVNLANTSIELSKQNMNRFARILFPPKPEVLSNMCKQGFDDALRFLHRN 242
+CP S QL ++ +T++++ +Q +LF P E +S++ + + + R
Sbjct: 135 MCPIT-SRQLTASDVTDTAVKIGEQT------VLFLPDSEGVSSLRRASSSISFDVIERT 187
Query: 243 NLISCTRCLAVQSTFQLQDVLDDTTYDYDPDCEECKTHRQDALVDDLPDTVMTIFQNAID 302
NL S L + + + +D D +C + T R+ + L +T+ + Q +
Sbjct: 188 NLASLNEGLIIGTPHIVIPSSNDVEVALDDECSDQNTQRRSNVFYGLCETLFKLDQGLVC 247
Query: 303 SA 304
S+
Sbjct: 248 SS 249
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 18 VAVCFKKYAPHLLLGKISGAS--FGALSACCLLCDLPIGEITSDVLRVVREARSGSL 72
V C KKYA +LL + G + L C + +GE+ SDVLR + R SL
Sbjct: 96 VEKCMKKYADNLLRS-LEGITNRLSQLEIYCYKLERSMGELRSDVLRDETDQRLKSL 151
>01_01_1197 -
9630506-9630681,9630774-9630805,9630894-9630988,
9631569-9631642,9631732-9631843,9631967-9632030,
9632210-9632275,9632396-9632526,9632884-9633021,
9633115-9633227,9633306-9633471,9633588-9633701,
9633791-9633853,9633953-9634060,9634143-9634259,
9634343-9634505,9634646-9634743,9634852-9634949,
9635054-9635190,9635309-9635530,9635625-9635830,
9636758-9636845,9638085-9638668
Length = 1054
Score = 29.1 bits (62), Expect = 5.4
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 185 PRDLSSQLFHVNLANTSIELSKQNMNRFARILFPPKP-----EVLSNMCKQGFDDALRFL 239
P + ++ + N IEL + P +P E+ S + Q + AL L
Sbjct: 490 PEGVEVSVYEYFVKNRGIELRYSGDFPCINVGKPKRPTYFPIELCSLVPLQRYTKALSTL 549
Query: 240 HRNNLISCTRCLAVQSTFQLQDVLDDTTYDYDPDCEEC 277
R++L+ +R + L DVL + YD +P C
Sbjct: 550 QRSSLVEKSRQKPEERMSVLSDVLKRSNYDSEPMLNSC 587
>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
Length = 812
Score = 28.7 bits (61), Expect = 7.1
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 271 DPDCEECKTHRQDALVDDLPDTVMTIFQNAIDSANNGIVNWVMKQRAVRYLNLLTLPYRV 330
D +C++ +H +D+L D V I D + + V R N+LT P+++
Sbjct: 55 DAECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALEQEVRNSFIHRTRNMLTYPFKL 114
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 195 VNLANTSIELSKQNMNRFARILFPPKPEVLSNMCKQGFDDALRFLHRNNLISCTRCLAVQ 254
V A ELS++ N+F R++ P+ +C Q + HR L + T + Q
Sbjct: 1241 VMAAKLQQELSEREKNKFCRLMDVPRESSPKELCAQPYQGLAEACHR-ILFNVT---SAQ 1296
Query: 255 STFQLQDVL 263
S +L D L
Sbjct: 1297 SNDELTDTL 1305
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 41 ALSACCLLCDLPIGEITSDVLRVVREARSGSLGPFSPS 78
+++A C++ D T +VLR+VREAR+ ++ + S
Sbjct: 642 SIAAACVVADPARRPTTPEVLRMVREARAEAMSSSNSS 679
>01_01_0323 +
2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 28.3 bits (60), Expect = 9.4
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 200 TSIELSKQNMNRFARILFPPKPEVLSNMCKQGF-DDALRFLHRNNLISCTRCLAVQSTFQ 258
TS++L++QN + + KP+ S +C GF D++ F + + S R A+ S+ Q
Sbjct: 850 TSLDLAEQNEMLYLSLQLRKKPQPFSFVC--GFMADSIPF-YSQIVKSLPR--ALSSSDQ 904
Query: 259 LQDVLDDTTYDYDP 272
LQ+VLD +P
Sbjct: 905 LQNVLDSLAVYSNP 918
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.140 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,463,887
Number of Sequences: 37544
Number of extensions: 454874
Number of successful extensions: 1188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 9
length of query: 341
length of database: 14,793,348
effective HSP length: 83
effective length of query: 258
effective length of database: 11,677,196
effective search space: 3012716568
effective search space used: 3012716568
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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