GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001056-TA|BGIBMGA001056-PA|IPR002641|Patatin
         (341 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-5|AAB53832.2|  621|Caenorhabditis elegans Hypothetical pr...   270   7e-73
U00048-4|AAM15547.1|  751|Caenorhabditis elegans Hypothetical pr...   270   7e-73
Z74030-1|CAA98440.3|  266|Caenorhabditis elegans Hypothetical pr...   131   8e-31
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...   125   4e-29
U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta f...    33   0.39 
U80842-9|AAB37945.2|  258|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U00047-9|AAY43977.1|  293|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>U00048-5|AAB53832.2|  621|Caenorhabditis elegans Hypothetical
           protein C05D11.7a protein.
          Length = 621

 Score =  270 bits (663), Expect = 7e-73
 Identities = 126/256 (49%), Positives = 174/256 (67%), Gaps = 1/256 (0%)

Query: 1   MNLSFAGCGFLGIYHVGVAVCFKKYAPHLLLGKISGASFGALSACCLLCDLPIGEITSDV 60
           MNLSF+GCGFL +YH GVA   K+YAP LL  KI GAS G++ AC L+  + I   TS +
Sbjct: 11  MNLSFSGCGFLCVYHAGVAAAIKEYAPELLQNKILGASAGSIVACGLITGVCISHATSTI 70

Query: 61  LRVVREARSGSLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRVYDGKNVIV 120
           L+VV +ARS + GP  P FN+  ++ + +E  LP +A+++ +G+L ISLTR  D +NVI+
Sbjct: 71  LKVVSQARSRTFGPLHPEFNLLGIVRDELEVILPPNAYEMCTGRLVISLTRWSDHENVII 130

Query: 121 SEFPTREDLLQAVMASCFVPVFSGLLPPRFHGIRYMDGGFSDNLPVLDENTITVSPFCGE 180
            E+ +  DL+ A+M SCF+P++ G+ PP+F G++Y+DGG SDN P+ DE+T+TVSPF GE
Sbjct: 131 DEYRSNADLIDAIMCSCFIPLYCGITPPKFRGVQYIDGGVSDNQPIYDEHTVTVSPFSGE 190

Query: 181 SDICPRDL-SSQLFHVNLANTSIELSKQNMNRFARILFPPKPEVLSNMCKQGFDDALRFL 239
           SDICP D  S  +  V+   TSI  + +NM R    L+P   + LS MC QGF DALRFL
Sbjct: 191 SDICPPDWDSGSMLGVDFNGTSIRFTTRNMFRLMACLWPRSTDDLSRMCLQGFGDALRFL 250

Query: 240 HRNNLISCTRCLAVQS 255
            +  L  C RCL +Q+
Sbjct: 251 TKCGLAPCIRCLTIQT 266


>U00048-4|AAM15547.1|  751|Caenorhabditis elegans Hypothetical
           protein C05D11.7b protein.
          Length = 751

 Score =  270 bits (663), Expect = 7e-73
 Identities = 126/256 (49%), Positives = 174/256 (67%), Gaps = 1/256 (0%)

Query: 1   MNLSFAGCGFLGIYHVGVAVCFKKYAPHLLLGKISGASFGALSACCLLCDLPIGEITSDV 60
           MNLSF+GCGFL +YH GVA   K+YAP LL  KI GAS G++ AC L+  + I   TS +
Sbjct: 11  MNLSFSGCGFLCVYHAGVAAAIKEYAPELLQNKILGASAGSIVACGLITGVCISHATSTI 70

Query: 61  LRVVREARSGSLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRVYDGKNVIV 120
           L+VV +ARS + GP  P FN+  ++ + +E  LP +A+++ +G+L ISLTR  D +NVI+
Sbjct: 71  LKVVSQARSRTFGPLHPEFNLLGIVRDELEVILPPNAYEMCTGRLVISLTRWSDHENVII 130

Query: 121 SEFPTREDLLQAVMASCFVPVFSGLLPPRFHGIRYMDGGFSDNLPVLDENTITVSPFCGE 180
            E+ +  DL+ A+M SCF+P++ G+ PP+F G++Y+DGG SDN P+ DE+T+TVSPF GE
Sbjct: 131 DEYRSNADLIDAIMCSCFIPLYCGITPPKFRGVQYIDGGVSDNQPIYDEHTVTVSPFSGE 190

Query: 181 SDICPRDL-SSQLFHVNLANTSIELSKQNMNRFARILFPPKPEVLSNMCKQGFDDALRFL 239
           SDICP D  S  +  V+   TSI  + +NM R    L+P   + LS MC QGF DALRFL
Sbjct: 191 SDICPPDWDSGSMLGVDFNGTSIRFTTRNMFRLMACLWPRSTDDLSRMCLQGFGDALRFL 250

Query: 240 HRNNLISCTRCLAVQS 255
            +  L  C RCL +Q+
Sbjct: 251 TKCGLAPCIRCLTIQT 266


>Z74030-1|CAA98440.3|  266|Caenorhabditis elegans Hypothetical
           protein D1054.1 protein.
          Length = 266

 Score =  131 bits (316), Expect = 8e-31
 Identities = 78/247 (31%), Positives = 135/247 (54%), Gaps = 10/247 (4%)

Query: 3   LSFAGCGFLGIYHVGVA--VCFKKYAPHLLLGKISGASFGALSACCL-LCDLPIGEITSD 59
           LSF+G GFLG Y+ G A  +  +K      + + +GAS G+L A  L L    +      
Sbjct: 22  LSFSGSGFLGAYNFGAAKRLMQEKKTIGEKVDRFAGASAGSLVAAILALAPEKLDAAIDT 81

Query: 60  VLRVVREARSGSLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRVYDGKNVI 119
           +  +     +   G  +P + +   L+  ++ +LP D      G+LHIS+T++   +N++
Sbjct: 82  LYSMADHVHAQRFGAMTPGYYLNEQLVTIIDDFLPTDIAN-AQGRLHISITKLKKWENIM 140

Query: 120 VSEFPTREDLLQAVMASCFVPVFS-GL--LPPRFHGIRYMDGGFSDNLPVL-DENTITVS 175
           +++F +R+ L+  ++ASC++P++S G   +PP  +    +DGG ++NLP   D  TIT S
Sbjct: 141 INKFDSRDHLISCLLASCYIPMYSMGYKGVPPIINQEECIDGGMTNNLPTFPDVLTITCS 200

Query: 176 PFCGESDICPRDLSSQLFHVNLANTSIELSKQNMNRFARILFPPKPEVLSNMCKQGFDDA 235
           PF  ++DICP D S+  +++       + S++N+ R AR LFPP   +L    + G  DA
Sbjct: 201 PFSSQADICPDDPST--WNIEFGKQIFKASRRNLYRGARALFPPNRFILKQYYEMGISDA 258

Query: 236 LRFLHRN 242
             F+ +N
Sbjct: 259 DIFIKKN 265


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score =  125 bits (302), Expect = 4e-29
 Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)

Query: 48  LCDLPIGEITSDVLRVVREARSGSLGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHI 107
           LC L I E   ++ ++  E    +LG  SP F I + L + +EK+LP+D  K  +  L +
Sbjct: 176 LCILSISEAVEEIYKMADEVNDKTLGAMSPGFVISDRLRKVVEKFLPDDVAK-ANDLLFV 234

Query: 108 SLTRVYDGKNVIVSEFPTREDLLQAVMASCFVPVFSGLL---PPRFHGIRYMDGGFSDNL 164
           S+T++   KN ++S F ++ DL+  +MASC+ P++S  L    P   G  Y+DGG+S+ +
Sbjct: 235 SVTKLKTWKNELISNFESKIDLIDCLMASCYHPMYSSGLNGKAPILRGEAYIDGGYSNMI 294

Query: 165 P-VLDENTITVSPFCGESDICPRDLSSQL--FHVNLANTSIELSKQNMNRFARILFPPKP 221
           P  LD  T+TVS F G++DICP + S+    F     N +++L+  NM R    LFPP  
Sbjct: 295 PEFLDMRTVTVSAFAGDADICPVEKSALFNDFMFAFFNQNMKLTLSNMKRVTNALFPPTR 354

Query: 222 EVLSNMCKQGFDDALRFL 239
            +L      G  DA + L
Sbjct: 355 AILQEYFNAGARDAEKLL 372



 Score = 35.1 bits (77), Expect = 0.072
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 3   LSFAGCGFLGIYHVGVAVCFKKYAPHLL--LGKISGASFGALSACCLL 48
           LSF GCGFLG Y  G A     +   L+  + + SG S G+L A   +
Sbjct: 97  LSFGGCGFLGSYQFGAAKMIFDHGKKLMKRVERYSGCSSGSLVAAMFI 144


>U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta
           family protein 6 protein.
          Length = 950

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 72  LGPFSPSFNIQNVLLEGMEKYLPEDAHKIVSGKLHISLTRVYDGKNVIVSEFPTREDLLQ 131
           +GP  PS   Q +LL+ +E YL +  H    G + +  T +        S    +   L 
Sbjct: 43  IGPHKPSPEEQFLLLQVIEDYLNKRYHSSSQGDVSVIRTFLLHYTKNSRSSTVDQPAFLT 102

Query: 132 AVMASCFVPVFSGLLPPRFHGIRYMDGGFSDNL 164
             MA  F  VF+   P R+    + D  FSDN+
Sbjct: 103 NKMAHIFSLVFAADFPERWSSF-FNDLFFSDNI 134


>U80842-9|AAB37945.2|  258|Caenorhabditis elegans Hypothetical
           protein ZC239.6 protein.
          Length = 258

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 273 DCEECKTHRQDALVDDLPDTVMTIFQNAIDSANNGIVNWVMKQ 315
           + E+  +  +DA +++  D +  +F N ID+A + I NW  K+
Sbjct: 164 EIEKIPSPPKDAKIENYDDYLKLVFSNIIDAARDKISNWDFKK 206


>Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical
           protein F13B12.3 protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 104 KLHISLTRVYDGKNVIVSEFPTREDLLQAVMASCFVPVFSGLL 146
           K H+S  +  +  ++I S F  R DL + + A C  P+F+GLL
Sbjct: 90  KCHLSQVKDTNMLHLIASSFFKRSDLHE-IWAKCEYPIFAGLL 131


>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 200 TSIELSKQNMNR-FARILFPPKPEVLSNMCKQ-----GFDDALRFLHRNNLISCTRCLAV 253
           + +E +++N  R + RI     PEV+   CKQ     G D +++ L   N ++  +  AV
Sbjct: 125 SEVENTQENARRRYQRIFEKNDPEVVKKKCKQLLDDSGMDASIKDLLSKNNVAIRKEHAV 184

Query: 254 QSTFQLQDVLDDTTYDYDP 272
            +   LQ  L  T   + P
Sbjct: 185 YNDIGLQTTLLHTFLSFHP 203


>U00047-9|AAY43977.1|  293|Caenorhabditis elegans Hypothetical
           protein ZK418.10 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 151 HGIRYMDGGFSDNLPVLDENTITVSPFCGESDICPRDLSSQLFHVNLAN 199
           HG+R+    FS ++ V +E   +   F G  DI P + SSQLF+ +  N
Sbjct: 136 HGVRFKSAIFSTSMRVFNEKK-SYMHFPGNVDIFP-EHSSQLFNPHFLN 182


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,861,905
Number of Sequences: 27539
Number of extensions: 389979
Number of successful extensions: 1054
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1039
Number of HSP's gapped (non-prelim): 10
length of query: 341
length of database: 12,573,161
effective HSP length: 82
effective length of query: 259
effective length of database: 10,314,963
effective search space: 2671575417
effective search space used: 2671575417
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)