GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001056-TA|BGIBMGA001056-PA|IPR002641|Patatin
         (341 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.31 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 25   YAPHLLLGKISGASFGALSACCLLCDLPIGEITSDVLRVVREARSGSLGPFSPSFNIQNV 84
            Y  + L+G I   +F  L +  +L       +T  V +V   AR   L   S  ++ +  
Sbjct: 872  YLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWSCRCK 931

Query: 85   LLEGMEKYLPEDAHKIV---------SGKLHISLTRVYDGKNVIVSEFPTREDLLQAVMA 135
             L+ +  ++ ++AHK+V          G    +  R  +    + S++ ++  +++++M 
Sbjct: 932  FLQELSSWVSDNAHKVVDASDVWCYYGGDARPAYRRRLNVNETVCSDYFSQGGVIESIMV 991

Query: 136  SCFVPVFSGLL 146
            S ++P+ +  L
Sbjct: 992  SDYLPLVAATL 1002


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 271 DPDCEECKTHRQDALVDDLPDTVMTIFQNAIDSANN 306
           D D EE +  ++  +  +LP+   ++F+N ++   N
Sbjct: 140 DNDEEEAQKPKEQYIPPELPNDEKSLFENGVEIGIN 175


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 42 LSACCLLCDLPIGEITSDVLRVVREARSGSL 72
          +S CC  CD   G  +S    VV  A  GS+
Sbjct: 9  MSCCCWCCDNLGGPGSSSAGGVVTGASGGSI 39


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 271 DPDCEECKTHRQDALVDDL 289
           DPD +EC     + + D+L
Sbjct: 200 DPDSKECSNQEYEIMKDNL 218


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 48  LCDLPIGEITSDVLRVVREARS 69
           + D+P+ + T DV+ V  +AR+
Sbjct: 410 ISDIPLHDATRDVILVGEQARA 431


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,774
Number of Sequences: 429
Number of extensions: 4609
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 341
length of database: 140,377
effective HSP length: 58
effective length of query: 283
effective length of database: 115,495
effective search space: 32685085
effective search space used: 32685085
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)