Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001055-TA|BGIBMGA001055-PA|undefined
         (687 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        33   0.007
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      23   5.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   7.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   9.2  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    23   9.2  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    23   9.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   9.2  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 33.1 bits (72), Expect = 0.007
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 6   EATIVDSSQLTPVYLINPNDSQANYIITLGDVEQKPISDNLKSFYEKSGSIENSIPNVIK 65
           E+T+ +     P  +I     QA     +  +EQ P S  L+  YE  G    SIP    
Sbjct: 37  ESTMFNGGGEIPQNIIQQQPQQARRRAFVKIIEQ-PASKALRFRYECEGRSAGSIPGASS 95

Query: 66  APAPRTIKKIDPAAVGNNLKLASFLLPKTEPSKPYVLNNV 105
            P  +T   I          +    + K EP +P+  N V
Sbjct: 96  TPENKTFPSIQVMGYQGRAVVVVSCVTKDEPFRPHPHNLV 135


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 35  GDVEQKPISDNLKSFYEKSGSIENSIPN 62
           G +  K +++ ++ FY +  + EN++ N
Sbjct: 342 GSITSKNVANKIRDFYYEGPNSENNLDN 369


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 191 EKIVPEPTYDPVTNTKFIYKVI 212
           ++I+P+  +   TN K  YKV+
Sbjct: 53  QEIIPKSYFGTTTNLKRFYKVV 74


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 38 EQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPAAVGNNLKLASFLLP 92
          E+K    +L    EKSG   +S  NV +A       K++P    ++  +   + P
Sbjct: 39 EEKSSLIDLTESEEKSGGSYSSNKNVSRADHSPVFGKVEPVPHTSSFNMGYLVSP 93


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 543 DKLSNYDGQIIGAVNMVDKAFEETNNINGLI 573
           D +++  G+++GAV  +D   +   N N  +
Sbjct: 254 DSVAHTAGELLGAVYSLDLELKHIENFNDFV 284


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 543 DKLSNYDGQIIGAVNMVDKAFEETNNINGLI 573
           D +++  G+++GAV  +D   +   N N  +
Sbjct: 254 DSVAHTAGELLGAVYSLDLELKHIENFNDFV 284


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 543 DKLSNYDGQIIGAVNMVDKAFEETNNINGLI 573
           D +++  G+++GAV  +D   +   N N  +
Sbjct: 574 DSVAHTAGELLGAVYSLDLELKHIENFNDFV 604


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,165
Number of Sequences: 317
Number of extensions: 6924
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 8
length of query: 687
length of database: 114,650
effective HSP length: 61
effective length of query: 626
effective length of database: 95,313
effective search space: 59665938
effective search space used: 59665938
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)