Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001055-TA|BGIBMGA001055-PA|undefined
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0) 38 0.035
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27) 36 0.14
SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.76
SB_56987| Best HMM Match : Cornifin (HMM E-Value=1.5) 32 1.3
SB_52084| Best HMM Match : Vicilin_N (HMM E-Value=1.7) 32 1.3
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.8
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 32 1.8
SB_56916| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1
SB_28543| Best HMM Match : DUF1337 (HMM E-Value=2.4) 31 3.1
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1
SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1
SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9) 31 4.1
SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013) 31 4.1
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.1
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 30 5.4
SB_56504| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.1
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 9.4
SB_24757| Best HMM Match : 7tm_1 (HMM E-Value=5e-17) 29 9.4
SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 29 9.4
>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 1958
Score = 37.5 bits (83), Expect = 0.035
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 442 IRLDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLGID--TSRFNESMVASNECN- 498
+ +DE T + L VKR LN+ +SFE E LG+D TS NE NE
Sbjct: 319 VTVDE--TSSQATLVVKRIGYLNKNNTVSFEVEPQTATLGVDFGTSSINEVFFGVNETEK 376
Query: 499 ----DVNNKVTLDQSKNNHIQFHSTHFDIRSSPIKPTSTV 534
+N+ L+ S+ + +T + SP K T +
Sbjct: 377 HITFPINDDTDLEDSETFSVTLKTTESGVTLSPDKATVAI 416
>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
Length = 799
Score = 35.5 bits (78), Expect = 0.14
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 496 ECNDVNNKVT--LDQSKNN---HIQFHSTHFDIRSSPIKPTSTVFRKFQITPDKLSNYDG 550
E ND NK+ + Q N H HS ++R+ PI S + K T D L+++ G
Sbjct: 256 EQNDFGNKMMRQIPQDLNTNYIHPGIHSCSPNVRTDPITELSQLAEKVNFTRDPLADFTG 315
Query: 551 QIIGAVNMVDKAFE-ETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGF 601
AV+ E E N + +N A D+ + ++ + +++GF
Sbjct: 316 DTRSAVSSRSSLGELEPNAVLPRVNGHNSRNPMVEATDKCYSVAGNVNQEGF 367
>SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 33.1 bits (72), Expect = 0.76
Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 439 AKKIRLDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLGID-TSRFNESMVASNEC 497
A + +LD + +E DL V +E L + + + ED +G++ N S + ++ C
Sbjct: 365 APEEKLDVSVSKIESDLCVFKETSLADEYKQALYVEDNTQTIGVEGRVENNSSFIDNSVC 424
Query: 498 -----------NDVNNKVTLDQSKNNHIQFHSTHFDIRSSPIKPTSTVFRKFQITPDKLS 546
++++ ++ ++KN S+H I S I P + Q PD+ +
Sbjct: 425 IEFLKISQQDNQNLDSSHSMHETKNFKDSVTSSH-SIASIDITP-GNAYMLAQTKPDEFA 482
Query: 547 NYDGQIIGAVNMVDKAFEETNNINGLINNDIELPCKENAIDQSWILSSDKSEDG 600
+ D + + V+ + +E I D + C +A+ ++S D +++G
Sbjct: 483 SQDQEFLNQVSWFEDILDEGRTKTSDIFGD-AIACLSSALGD--LVSGDDNDEG 533
>SB_56987| Best HMM Match : Cornifin (HMM E-Value=1.5)
Length = 752
Score = 32.3 bits (70), Expect = 1.3
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 582 KENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSNISDVTQDILT-N 640
+E+ ID+ ++ S G +KP S P ++D D K SST++ + T D+ N
Sbjct: 297 EESEIDEPYVASDSDDSSGLSKPGSNEAP----IQDEDIQKRSSTKAQ-KNRTPDVTNYN 351
Query: 641 VCSESNQSDSVLNFLDSLGSTCLS 664
Q+D + + L+ + S LS
Sbjct: 352 KGFHCEQTDKINDNLEGIESYPLS 375
>SB_52084| Best HMM Match : Vicilin_N (HMM E-Value=1.7)
Length = 520
Score = 32.3 bits (70), Expect = 1.3
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 582 KENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSNISDVTQDILT-N 640
+E+ ID+ ++ S G +KP S P ++D D K SST++ + T D+ N
Sbjct: 207 EESEIDEPYVASDSDDSSGLSKPGSNEAP----IQDEDIQKRSSTKAQ-KNRTPDVTNYN 261
Query: 641 VCSESNQSDSVLNFLDSLGSTCLS 664
Q+D + + L+ + S LS
Sbjct: 262 KGFHCEQTDKINDNLEGIESYPLS 285
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 31.9 bits (69), Expect = 1.8
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 566 TNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSS 625
T + L N+D++L K D+S ++D + + + + SL+ D + ++
Sbjct: 54 TEALGKLENSDLQLSDKLAKTDKS---TNDSTYE--VNMEEIETSSLVSKIDEVSREIPD 108
Query: 626 TRSNISDVTQDILTNVCSESNQSDSVLNFLDSL 658
+S +SD+TQ N+ SES + V + D L
Sbjct: 109 LQSKVSDITQASTENLPSESGNYERVTSVTDLL 141
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 31.9 bits (69), Expect = 1.8
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 51 EKSGSIENSIPNVIKAPAPRTIKKIDPAAVGNNLKLASFLLPKTEPSKPYVLNNVILKPS 110
E G + +P + + PA + A ++ L P +P K +N K +
Sbjct: 2347 EPQGLPQAQLPMIPRQPAVMMQPVLPLAYQQAQVQSPYALYPGWQPQKHVNINVQTAKST 2406
Query: 111 LPAVSNTRKINLQSTEQKTPNTI-----PVFGIDRKIVKLKDGMLTRRNRVERALPKIKP 165
+P S+TR + S +QK +T+ P R++V + +L RR R L +
Sbjct: 2407 VPH-SSTRNADRPSDQQKVRSTVPKASSPAVRPKRQLVNILKNILQRRRGPTRLLDNLLK 2465
Query: 166 KEN 168
K N
Sbjct: 2466 KPN 2468
>SB_56916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 31.1 bits (67), Expect = 3.1
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 144 KLKDGMLTRRNRVE-RALPKIKPKENLNKLNDDQVKMVNHALKIFSDPEKIVP 195
K+K G+ + N E + ++ P +NLNKL DD++ V A+ I + +I P
Sbjct: 22 KIK-GLEPKPNPTENKPAAQLDPDKNLNKLGDDELNKVKAAMDIDFEKNRIRP 73
>SB_28543| Best HMM Match : DUF1337 (HMM E-Value=2.4)
Length = 238
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 429 LKKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNET----KRLSFESEDLLTKL 480
+++LKA+ ++ L E+ + LE DL K E+ + K+LS E+EDLLT+L
Sbjct: 28 VEELKAEEGNLEENNLKER-SKLEKDLKAKYEQVIETKNYLIKKLSKENEDLLTEL 82
>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 31.1 bits (67), Expect = 3.1
Identities = 48/229 (20%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 443 RLDEKHTLLELDLAVKREEDLNETKRLSFESEDLL--------TKLGIDTSRFNESMVA- 493
+L+EK+ L+ DLA R E+L E KR E+ D L KL ++ E+ VA
Sbjct: 661 QLNEKNETLQNDLA-SRMEELGEVKRKLSETTDALQHETSAAEQKLASLAAKLEEAFVAN 719
Query: 494 SNECNDVNNKVTLDQSKNNHIQFHSTHFDIRSSPIKPTSTVFRKFQITPDKLSNYDGQII 553
S + ++ + + H ++ V ++ T ++S+ +
Sbjct: 720 SAKTKEIEELTSRVNQLIETKETSEAHVQQLKENLENGQEVLKRKDTTIQEISSALKEAE 779
Query: 554 GAVNMVDKAF-EETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSL 612
++ V+K E++++IN L ++++ E +I + + K E K +S + ++
Sbjct: 780 NKLSGVEKQMAEKSSSINAL---ELKVEDLEASIQEQLVCIKAKKE----KIESYVS-TI 831
Query: 613 IHVKDTDTNKVSSTRSNISDVTQDILTNVCSESNQSDSVLNFLDSLGST 661
+++ ++K SS + I + ++ L+ ++NQ + +L D++ T
Sbjct: 832 ERLENESSSKCSSLQETIWGLEKE-LSQFKEKTNQIEELLKEKDTVIDT 879
>SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 31.1 bits (67), Expect = 3.1
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 533 TVFRKFQITPDKLSNYDGQIIGAVNMVDKAFEETNNINGLINN-DIELPCKENAIDQSWI 591
++ + + +N +I ++++ + F TN ++ LIN D+ N +D
Sbjct: 28 SLINTLDLLTELFTNTLDSLINTLDLLTELF--TNTLDSLINTLDLLTELFTNTLDSLTE 85
Query: 592 LSS---DKSEDGFTKP-DSLIEP--SLIHVKDTDTNKVSSTRSNISDV--TQDILTNVCS 643
L + D + FT DSLI SLI+ D+ N + S + + + T D L N
Sbjct: 86 LFTNTLDSLTELFTNTLDSLINTLDSLINTLDSLINTLDSLTNTLDSLINTLDSLINTLD 145
Query: 644 E-----SNQSDSVLNFLDSLGST 661
+N DS++N LDSL +T
Sbjct: 146 SLTELFTNTLDSLINTLDSLINT 168
>SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9)
Length = 813
Score = 30.7 bits (66), Expect = 4.1
Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 9/200 (4%)
Query: 452 ELDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFNESMVASNECNDVNNKVTLDQSKN 511
E DL R+E ++ L ESED L L + + +V + ++ + D+S++
Sbjct: 89 EDDLVHLRDESEDDLVHLRDESEDDLVHL---KDKSEDGLVHLKDESEDDLVHLKDESED 145
Query: 512 N--HIQFHSTHFDIRSSPIKPTSTVFRKFQITPDKLSNYDGQIIGAVNMVDKAFEETNNI 569
+ H++ S + V K + D + D V++ D++ ++ ++
Sbjct: 146 DLVHLKDESEDDLVHLKDESEDDLVHMKDESEDDLVHLKDESEDDLVHLKDESEDDLVHL 205
Query: 570 NGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSN 629
+D+ EN + + D+SED E L+H+KD + + +
Sbjct: 206 KDESEDDLVHLKDENESEDDLVHLKDESEDDLVHLKDESEDGLVHLKDESEDDL----VH 261
Query: 630 ISDVTQDILTNVCSESNQSD 649
+ D ++D L ++ E + D
Sbjct: 262 LKDESEDDLVHLKDEMHLRD 281
Score = 30.3 bits (65), Expect = 5.4
Identities = 41/201 (20%), Positives = 86/201 (42%), Gaps = 9/201 (4%)
Query: 452 ELDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFNESMVASNECNDVNNKVTLDQSKN 511
E DL R+E ++ L ESED L L ++ + +E + V+ K D+S++
Sbjct: 317 EDDLVHLRDESEDDLVHLKDESEDGLVHLKDESEDDLVHLKDESEDDLVHLK---DESED 373
Query: 512 N--HIQFHSTHFDIRSSPIKPTSTVFRKFQITPDKLSNYDGQIIGAVNMVDKAFEETNNI 569
+ H++ S + V K + D + D V++ D++ ++ ++
Sbjct: 374 DLVHLKDESEDDLVHLKDESEDGLVHLKDESEDDLVHLKDESEDDLVHLKDESEDDLVHL 433
Query: 570 NGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSN 629
++ +L ++ + + D+SED E L+H+KD + + +
Sbjct: 434 KDENESEDDLVHLKDESEDDLVHLKDESEDDLVHLRDESEDGLVHLKDESEDDL----VH 489
Query: 630 ISDVTQDILTNVCSESNQSDS 650
+ D ++D L ++ ES +S
Sbjct: 490 LKDESEDDLVHLKDESEDDES 510
Score = 29.9 bits (64), Expect = 7.1
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 595 DKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSNISDVTQDILTNVCSESNQSDSVLNF 654
D+SEDG E L+H+KD + + ++ D ++D L ++ E+ D +++
Sbjct: 391 DESEDGLVHLKDESEDDLVHLKDESEDDL----VHLKDESEDDLVHLKDENESEDDLVHL 446
Query: 655 LD 656
D
Sbjct: 447 KD 448
>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 459
Score = 30.7 bits (66), Expect = 4.1
Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 484 TSRFNESMVASNECNDVNNKVTLDQSKNNHIQFHSTHFDIRSSPIKPTSTVFRKFQITPD 543
T NE A+ E N K NN + + D+ ++ + T+ T D
Sbjct: 224 TRGINEKHGATQETNGTTQKT------NNTTEITNGTTDMTNNTTEMTNNTTEITTSTTD 277
Query: 544 KLSNYDGQIIGAVNMVDKAFEETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTK 603
N +M D + TN+ + N+ IE+ + + ++ + D +
Sbjct: 278 MTDNTTEMTNSTTDMTDNTTDVTNSTTDMTNSSIEMTNSTTDVTDNTTEMTNSTTDMKSN 337
Query: 604 PDSLIEPSLIHVKDTDTNKVSSTRSNISDVTQDILTNVCSESNQSDSVL 652
+ S +K T +ST ++++D T + +TN + + +VL
Sbjct: 338 TTEMTN-STTDMKSNTTEMTNST-TDVTDNTTE-MTNSTTVTTDGTTVL 383
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 30.7 bits (66), Expect = 4.1
Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 422 VNKRVWKLKKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLG 481
++K K L + + + ++H L K E DLN+ L S+ + L
Sbjct: 299 LDKETISSKYLPSHTQEVQVTQKHDQHADLYSPAEEKCESDLNQ---LGSASKGTVFYLS 355
Query: 482 IDTSRFNESMVASNEC---NDVNNKVTLDQSKNNHIQFHSTHF--DIRSSPIKPTSTVFR 536
ID +F++ V +C ++ ++ D + ++ H D+ S + +
Sbjct: 356 IDKEKFDDFSVQEIKCETGHEYDDVEYSDVHVYDDVECREVHEYDDVEQSEKPCEDAIDK 415
Query: 537 KFQITPDKLSNYDGQI 552
K+QI D N DG +
Sbjct: 416 KYQIMEDSKENQDGSL 431
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 30.3 bits (65), Expect = 5.4
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 428 KLKKLKAQNSGAKKIRLDEKHTLLELDLAVKREED-LNETKRLSFESEDLLTKL 480
K+KK +AQ ++K R D K L L +KR +D +NE +R + E + +L
Sbjct: 249 KVKKCEAQLQNSQKQRDDLKRQLERLREELKRSKDSMNEVRRDALEQKKAADRL 302
>SB_56504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 29.9 bits (64), Expect = 7.1
Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 41 PISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPAAVGNNLKLASFLLPKTEPSKPY 100
PI ++ S +K + + P+ ++P+PR +K + +++ + KL K PS P
Sbjct: 87 PIKESDTSL-QKKRKVRSCSPSSSRSPSPRPTRKPEHSSL-SPAKLGKGT-SKLSPSSPK 143
Query: 101 VLNNVILKPSLPAVSNT------RKINLQSTEQKTPNTIPVFGIDRKIVKLKDGMLTRRN 154
VL+ V + ++ + + +K + + T K + + RK++ + DGM T +
Sbjct: 144 VLSKVSDQDTVKSKRSKFQKFTKKKGSGKDTLLKKSFKVRQERLKRKVLDVCDGMSTSES 203
Query: 155 RVERALPKIKPKENLNKLNDDQVKMVNHALKIFSD 189
E + ++K N + +I SD
Sbjct: 204 GTESTVSSTTSSLKMSKRNRKNFHTFENLRRISSD 238
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.5 bits (63), Expect = 9.4
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 423 NKRVWKLKKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLGI 482
N R + + K + S +K+ LDE+H LEL + + +E+L E K+ E +T++ +
Sbjct: 518 NSRTIQELESKLEASESKRQILDEQHQSLELKIQ-QLQEELFELKQQRDSFEHQITEIEV 576
Query: 483 DTSRFNESMVASNE 496
S+ + + S +
Sbjct: 577 THSKNKDELNRSRK 590
>SB_24757| Best HMM Match : 7tm_1 (HMM E-Value=5e-17)
Length = 455
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 369 KDGFCMHNPSTTQNQSNVEVNQPSELLITNHEEAMIPDTEDCARISSAENWPTVNKRVW 427
K G+ M + + ++ ++ + +ITNH + +I + D + EN PT K+ W
Sbjct: 252 KMGYQMVDANDNEDGAHALTTILKDTIITNHRDTIITNHRDTIITNHREN-PTTGKQAW 309
>SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.5 bits (63), Expect = 9.4
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 432 LKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFNE-S 490
+K +G +++D + L L ++ KR+ F++ D+LTK + ++++ S
Sbjct: 27 IKDTGTGNGTLKIDVPKLMGHLSLIAYKDGQKAYGKRVDFDTIDILTKRFNSSKKYSDLS 86
Query: 491 MVASNECNDVNNKV 504
+ NE N++ V
Sbjct: 87 RMVFNELNELERAV 100
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 29.5 bits (63), Expect = 9.4
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 429 LKKLKAQNSGAKKIRLDEKHTLLEL-DLAVKREEDLNETKRLSFESEDL---LTKLGIDT 484
L+K +N+ ++++ +KH L + L + R+E +E R+ ++ +TK+ +
Sbjct: 327 LEKGAIKNAFIEELQEKKKHEALRVAQLYMSRDEQYDEYARVMPTGPNVFSSVTKICVSE 386
Query: 485 SRFNESMVASNECNDVNNKVTLDQSKNN 512
SR +S S E N K T DQ N
Sbjct: 387 SRATKSADRSLEAISSNTKTTHDQDLVN 414
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,795,991
Number of Sequences: 59808
Number of extensions: 1001255
Number of successful extensions: 2258
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2200
Number of HSP's gapped (non-prelim): 56
length of query: 687
length of database: 16,821,457
effective HSP length: 87
effective length of query: 600
effective length of database: 11,618,161
effective search space: 6970896600
effective search space used: 6970896600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -