Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001055-TA|BGIBMGA001055-PA|undefined
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67500.1 68414.m07688 DNA polymerase family B protein similar... 35 0.21
At5g16100.1 68418.m01881 hypothetical protein 34 0.36
At2g37630.1 68415.m04616 myb family transcription factor (MYB91)... 32 1.5
At2g05090.1 68415.m00534 hypothetical protein includes At5g37080... 31 1.9
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 31 2.5
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 31 2.5
At1g64570.1 68414.m07319 expressed protein 31 3.4
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 30 4.4
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 30 4.4
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 30 4.4
At5g53020.1 68418.m06585 expressed protein 30 4.4
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 30 4.4
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 30 4.4
At1g75100.1 68414.m08722 expressed protein low similarity to SP|... 30 4.4
At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)... 30 5.9
At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)... 30 5.9
At2g15760.1 68415.m01804 calmodulin-binding protein similar to A... 30 5.9
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 30 5.9
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 29 7.8
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 29 7.8
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 29 7.8
At3g28770.1 68416.m03591 expressed protein 29 7.8
At2g17550.1 68415.m02031 expressed protein 29 7.8
At1g52080.1 68414.m05875 actin binding protein family contains P... 29 7.8
>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
SP|Q61493 DNA polymerase zeta catalytic subunit (EC
2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
DNA polymerase family B
Length = 1890
Score = 34.7 bits (76), Expect = 0.21
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 6/145 (4%)
Query: 34 LGDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPR-TIKKI-DPAAVGNNLKLASFLL 91
+G + P S+ L EKS +K P R T +I D A+G AS
Sbjct: 398 VGTCSEFPASEQLSPLGEKSEEASMENDEYMKTPTDRDTPAQIQDAEALGLFKWFASSQA 457
Query: 92 PKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPNTIPVFGIDRKIVKLKDGMLT 151
+ S +L IL P LP S + + + ST+ + + + I+ ++ +
Sbjct: 458 AEDINSDDEILRETILSPLLPLASINKVLEMASTDYVSQSQKEC----QDILDSQENLPD 513
Query: 152 RRNRVERALPKIKPKENLNKLNDDQ 176
+ +RALP +NL +D Q
Sbjct: 514 FGSSTKRALPSNPDSQNLRTSSDKQ 538
>At5g16100.1 68418.m01881 hypothetical protein
Length = 356
Score = 33.9 bits (74), Expect = 0.36
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 444 LDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFNESMVASNECNDVNNK 503
+DE H ELDL++ + +E + LSF ED T I F + N+ NDV +
Sbjct: 68 VDETHLFHELDLSISNYDSKDEFETLSF-VEDGFT---IPLDMFEQPNDEHNDNNDVPGE 123
Query: 504 VTLDQSKN 511
+ D KN
Sbjct: 124 IGNDNGKN 131
>At2g37630.1 68415.m04616 myb family transcription factor (MYB91)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 367
Score = 31.9 bits (69), Expect = 1.5
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 408 EDCARISSAEN-WPTVNKRV-WKLKKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNE 465
E C + W K W+L++L+ Q K R EK +E + REE N
Sbjct: 256 ECCRELEEGHRAWADHKKEAAWRLRRLELQLESEKTCRQREKMEEIEAKMKALREEQKNA 315
Query: 466 TKRLSFESEDLLTKLGIDTSRFNESM 491
+++ E + L L D ++ +
Sbjct: 316 MEKIEGEYREQLVGLRRDAEAKDQKL 341
>At2g05090.1 68415.m00534 hypothetical protein includes At5g37080,
At5g37170, At2g05090
Length = 572
Score = 31.5 bits (68), Expect = 1.9
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 538 FQITPDKLSNYDGQIIGAVNMVDKAFEETNNINGLINNDIELPCKENAIDQSWIL----- 592
F ++ +K + Y G+ I V V + T +GL+ N + P + +Q ++
Sbjct: 413 FLVSVEKANIYGGKDIHKVTKVHLGIDITKEESGLLENTQDDPLTIGSEEQGPLMLTNSC 472
Query: 593 --SSDKSEDGFTKPDSLI-EPSLIHVKD-TDTNKVSSTRSNISDVTQDILTNVCSESNQS 648
SD + + + P S LI + D + T+K +R N+ + +I TNV E+ +
Sbjct: 473 ENFSDATNNELSTPSSKCGSADLIDIVDQSSTSKKLCSRVNLENGDDEIGTNVIIEN--A 530
Query: 649 DSVLNFLDSLGS 660
D + D GS
Sbjct: 531 DELKIIKDDAGS 542
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 31.1 bits (67), Expect = 2.5
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 22 NPNDSQANYIITLGDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPAAVG 81
N D + + D E+ SD+ E+ S E P + P R+ +
Sbjct: 150 NSGDEEEEKVTAESDSEEDDSSDD-----EEDDSSEEETPKKPEEPKKRSAEPNSSKNPA 204
Query: 82 NNLKLASFLLP-KTEPSKPYVLNNVILKPSLPAVSNT--RKINLQSTEQKTPNTIPVFG 137
+N K A F+ P KT+ KP+V + PS A N+ S +Q+TP + FG
Sbjct: 205 SNKK-AKFVTPQKTDSKKPHV-HVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFG 261
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 31.1 bits (67), Expect = 2.5
Identities = 31/150 (20%), Positives = 67/150 (44%), Gaps = 5/150 (3%)
Query: 393 ELLITNHEEAMIPDTEDCARISSAENWPTV--NKRVWKLKKLKAQNSGAKKIRLDEKHTL 450
E ++ E+A + D + A+ S+A N+ + N ++ + Q SG +K R+ +
Sbjct: 453 ENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGERGVQMSGGQKQRIAIARAI 512
Query: 451 LELDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFNESMVASNECNDVNNKVTLDQSK 510
++ + +E T L ESE ++ + + S +++ ++ + + N + K
Sbjct: 513 IKSPTILLLDE---ATSALDSESERVVQEALENASIGRTTILIAHRLSTIRNADVISVVK 569
Query: 511 NNHIQFHSTHFDIRSSPIKPTSTVFRKFQI 540
N HI +H ++ + ST+ QI
Sbjct: 570 NGHIVETGSHDELMENIDGQYSTLVHLQQI 599
>At1g64570.1 68414.m07319 expressed protein
Length = 1239
Score = 30.7 bits (66), Expect = 3.4
Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 2/163 (1%)
Query: 495 NECNDVNNKVTLDQSKNNHIQFHSTHFDIRSSPIKPTSTVFRKFQITPDKLSNYDGQIIG 554
+E + N + D+ + ++ D+ +P S ++ DG+I+
Sbjct: 16 SEPSSPNRDLDKDEEEEEECEYDDEEEDVDFNPFLKDSPSREASSSLSSEVETLDGEIVN 75
Query: 555 AVNMVDKAFEETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIH 614
++ V + E + ++ C+E I + + +E+G + L+
Sbjct: 76 SITTVPQTLEGRQGKEDIAMPSNDVSCQEPPIPDERTVGA-ANENGEQLVIQTQKQDLMS 134
Query: 615 VKDTDT-NKVSSTRSNISDVTQDILTNVCSESNQSDSVLNFLD 656
++ D K + R +++ T D L E++ D + N D
Sbjct: 135 TEEDDAICKRTRARYSLASFTLDDLEAFLQETDDEDDIPNVDD 177
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 30.3 bits (65), Expect = 4.4
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 74 KIDPAAVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPNTI 133
K DP VGNN+K + K + S+P L N + SL + S ++ N ST+ KT +++
Sbjct: 209 KSDPVTVGNNMKRTTQSPIKAKNSQPTQLKN--SQRSLGSESFSK--NTSSTKSKTKSSL 264
Query: 134 -PVFGIDRKIVK-LKDGMLTRRNR---VERALPKIKPKENLNKLNDDQVKMVNHA 183
I + +K + ++++ + V + + K N+ + V M+ HA
Sbjct: 265 ASKSSIPKPSLKQARRNVISKSSEIPTVSYSQHSVVAKSNVGPMTASDVAMLGHA 319
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/66 (34%), Positives = 28/66 (42%)
Query: 561 KAFEETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDT 620
K F N NG I DI A+ S +L S S PD + P + H+ TD
Sbjct: 72 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 131
Query: 621 NKVSST 626
NK ST
Sbjct: 132 NKYEST 137
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/66 (34%), Positives = 28/66 (42%)
Query: 561 KAFEETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDT 620
K F N NG I DI A+ S +L S S PD + P + H+ TD
Sbjct: 72 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 131
Query: 621 NKVSST 626
NK ST
Sbjct: 132 NKYEST 137
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 414 SSAENWPTVNKRVWKLKKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNETKRLSFES 473
S +NW + +R +++A + I ++H+LLEL +K +E L E+K + E
Sbjct: 67 SQKQNW--LRERYGLRLQIEALMKELRNIEKRKRHSLLELQERLKEKEGLLESKDKAIEE 124
Query: 474 E 474
E
Sbjct: 125 E 125
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/66 (34%), Positives = 28/66 (42%)
Query: 561 KAFEETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDT 620
K F N NG I DI A+ S +L S S PD + P + H+ TD
Sbjct: 102 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 161
Query: 621 NKVSST 626
NK ST
Sbjct: 162 NKYEST 167
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/66 (34%), Positives = 28/66 (42%)
Query: 561 KAFEETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDT 620
K F N NG I DI A+ S +L S S PD + P + H+ TD
Sbjct: 72 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 131
Query: 621 NKVSST 626
NK ST
Sbjct: 132 NKYEST 137
>At1g75100.1 68414.m08722 expressed protein low similarity to
SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
sapiens}
Length = 651
Score = 30.3 bits (65), Expect = 4.4
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
Query: 556 VNMVDKAFEETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHV 615
VN+ D+ + T +I + N D + P + S S + G T + EPS H
Sbjct: 461 VNIPDQQKKSTPDIPAM-NRD-QKPSQSTQKKDSDRESMNYKAPGDTVQEERQEPSTTHT 518
Query: 616 KDTDTNKVSSTRSNISDVTQDILTNVCSESNQSDSVLNFLDSLGSTCLSYPGMEIRSGTS 675
D ++ ++ D+TQD N E+N+ + +D+ S IRS S
Sbjct: 519 TSEDIDEPFHVNFDVEDITQD--ENKMEEANKDAEEIKNIDAKIRKWSSGKSGNIRSLLS 576
Query: 676 DFNLDLFS 683
L+S
Sbjct: 577 TLQYILWS 584
>At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)
identical to transcription factor (TGA1) GI:16550 from
[Arabidopsis thaliana]
Length = 368
Score = 29.9 bits (64), Expect = 5.9
Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 372 FCMHNPSTTQNQSNVEVNQPSELLITNHEEAMIPDTEDCARISSA-----ENWPTVNKRV 426
F M S N SN +N P+ ++I N+++ +ED + ++ + + ++
Sbjct: 23 FGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNVSEDTSHGTAGTPHMFDQEASTSRHP 82
Query: 427 WKLKKLKAQN-SGAKKIRLDEKHTLLELDLA----VKREEDLNETKRLSFESEDLLTKLG 481
K+++ AQN A+K RL +K + +L+ + ++ E++L+ ++ F + G
Sbjct: 83 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQLEQELDRARQQGFYVGN-----G 137
Query: 482 IDTSR--FNESM 491
IDT+ F+E+M
Sbjct: 138 IDTNSLGFSETM 149
>At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)
identical to transcription factor (TGA1) GI:16550 from
[Arabidopsis thaliana]
Length = 368
Score = 29.9 bits (64), Expect = 5.9
Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 372 FCMHNPSTTQNQSNVEVNQPSELLITNHEEAMIPDTEDCARISSA-----ENWPTVNKRV 426
F M S N SN +N P+ ++I N+++ +ED + ++ + + ++
Sbjct: 23 FGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNVSEDTSHGTAGTPHMFDQEASTSRHP 82
Query: 427 WKLKKLKAQN-SGAKKIRLDEKHTLLELDLA----VKREEDLNETKRLSFESEDLLTKLG 481
K+++ AQN A+K RL +K + +L+ + ++ E++L+ ++ F + G
Sbjct: 83 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQLEQELDRARQQGFYVGN-----G 137
Query: 482 IDTSR--FNESM 491
IDT+ F+E+M
Sbjct: 138 IDTNSLGFSETM 149
>At2g15760.1 68415.m01804 calmodulin-binding protein similar to
AR781 GI:1669593 from [Arabidopsis thaliana]; AR781
complements pheromone receptor deficient mutant of
Shizosaccharomyces pombe
Length = 315
Score = 29.9 bits (64), Expect = 5.9
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 415 SAENWPTVNKRVWKLKKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNETKRLSFESE 474
SA +P + WKLK L S + + K +L D+ K+ D E + S S
Sbjct: 187 SAILFPGRAYKKWKLKDLLLFRSASDGRPIPTKESLNRYDILTKK--DAEEVRNSSIRSR 244
Query: 475 DLLTKLGIDTSRFNESMVASNECNDVNNKVTLDQSK 510
+ + R N ++V+++E + N+ ++ K
Sbjct: 245 ESCESSVSRSRRRNGAVVSAHEMHYTENRAVSEELK 280
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 29.9 bits (64), Expect = 5.9
Identities = 13/64 (20%), Positives = 31/64 (48%)
Query: 591 ILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSNISDVTQDILTNVCSESNQSDS 650
I+S+D + G + D I P++ D + + S + + + + ++L C + ++
Sbjct: 1106 IISNDSPDSGKRRRDENISPNVAEDDDFEVSPSQSCKKTVRNKSNEVLHGECIDGDRRGM 1165
Query: 651 VLNF 654
L+F
Sbjct: 1166 ELDF 1169
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 29.5 bits (63), Expect = 7.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 103 NNVILKPSLPAVSNTRKINLQSTEQKTPNTIPVFGIDRKIVKLKD 147
+++ LKPSL S +RK+N+ + K P T+ I K L +
Sbjct: 23 HSLFLKPSLFRQSRSRKLNISCSSLKQPKTLEEEPITTKTPSLSE 67
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 29.5 bits (63), Expect = 7.8
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 580 PCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSNISDVTQDI-L 638
P +ENAI ++ S DK + F + +E + V++ DT + S +DV++D+ L
Sbjct: 422 PVEENAIALEFLASLDKEKVTFMSDQNALEN--LEVQEMDTEEPSKE----NDVSKDVNL 475
Query: 639 TNVCSESNQSDSVLNFLD 656
T+ +E +++ L +D
Sbjct: 476 TSNLTEILRANEALEEID 493
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 29.5 bits (63), Expect = 7.8
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 580 PCKENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSNISDVTQDI-L 638
P +ENAI ++ S DK + F + +E + V++ DT + S +DV++D+ L
Sbjct: 422 PVEENAIALEFLASLDKEKVTFMSDQNALEN--LEVQEMDTEEPSKE----NDVSKDVNL 475
Query: 639 TNVCSESNQSDSVLNFLD 656
T+ +E +++ L +D
Sbjct: 476 TSNLTEILRANEALEEID 493
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.5 bits (63), Expect = 7.8
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 429 LKKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFN 488
++KL+ QNS KK +EK + L VK+E D E K +SE T
Sbjct: 1120 MEKLEDQNSNKKKEDKNEKKKSQHVKL-VKKESDKKEKKENEEKSE---------TKEIE 1169
Query: 489 ESMVASNECNDVNNKVTLDQSK 510
S NE + K + DQ K
Sbjct: 1170 SSKSQKNEVDKKEKKSSKDQQK 1191
>At2g17550.1 68415.m02031 expressed protein
Length = 765
Score = 29.5 bits (63), Expect = 7.8
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 391 PSELLITNHEEAMIPDTEDCARISSAENWPTVNKRVW----KLKK-LKAQNSGAK--KIR 443
PS +T + P D A+ + N V+K+ LK+ L A SG K+
Sbjct: 349 PSHDSVTKSSSRLRPTVSDAAKQAEEINQEDVSKKESLSPRNLKRSLSAPVSGTSFGKLL 408
Query: 444 LDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFN 488
L+++H L + K E + E + E+E ++ RFN
Sbjct: 409 LEDRHVLTGAQIMRKHEATITEREETESETEPVVVDPIRRKERFN 453
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 427 WKLKKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKL 480
+K+KKL+A+N K + LLELD+A + + L K+L+ ++ + ++
Sbjct: 194 FKIKKLQAENEKLKAECFEHSKVLLELDMAKSQVQVLK--KKLNINTQQHVAQI 245
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,366,594
Number of Sequences: 28952
Number of extensions: 728538
Number of successful extensions: 1720
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1713
Number of HSP's gapped (non-prelim): 28
length of query: 687
length of database: 12,070,560
effective HSP length: 86
effective length of query: 601
effective length of database: 9,580,688
effective search space: 5757993488
effective search space used: 5757993488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -