GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001055-TA|BGIBMGA001055-PA|undefined
         (687 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    27   1.6  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         27   2.2  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     25   6.6  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 439 AKKIRLDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFNESMVASNECN 498
           A  I++D    +L  DLA    +D +E+K+ +F S+   T++     + NE  V + +  
Sbjct: 215 AFNIQVDNPICVLNQDLARSLLKDSDESKQYTFFSK--ATQIDTIKQKLNECAVIAKKAR 272

Query: 499 DV 500
           DV
Sbjct: 273 DV 274


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 37 VEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPAAVGNN 83
          V Q  + D L   YE+   IEN I N++  P PR   +   ++VG +
Sbjct: 44 VGQTVLEDTLT--YEEQQEIENEILNLLGLPGPRPAVRHLHSSVGKS 88


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 577 IELPCKENAIDQSWILSSDKSEDG 600
           +ELP    AI   WI +    EDG
Sbjct: 739 VELPPHRKAIGSKWIFNCKADEDG 762


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,542
Number of Sequences: 2123
Number of extensions: 28756
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 3
length of query: 687
length of database: 516,269
effective HSP length: 69
effective length of query: 618
effective length of database: 369,782
effective search space: 228525276
effective search space used: 228525276
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)