GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001055-TA|BGIBMGA001055-PA|undefined
         (687 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029508-1|AAH29508.1|  335|Homo sapiens coiled-coil domain cont...    37   0.21 
AF273051-1|AAG34911.1|  335|Homo sapiens CTCL tumor antigen se57...    37   0.21 
AK128159-1|BAC87304.1|  822|Homo sapiens protein ( Homo sapiens ...    33   4.4  

>BC029508-1|AAH29508.1|  335|Homo sapiens coiled-coil domain
           containing 68 protein.
          Length = 335

 Score = 37.1 bits (82), Expect = 0.21
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 18/112 (16%)

Query: 422 VNKRVWKLKKLKAQNSGAKKI--RLDEKHT-LLELDLAVKREEDLNET---KRLSFESED 475
           VNK + K +KLK       ++  +L+EKH+ + EL+  V+R E    T   ++LS E++ 
Sbjct: 158 VNK-LEKEQKLKQHVENLNQVAEKLEEKHSQITELENLVQRMEKEKRTLLERKLSLENKL 216

Query: 476 LLTKLGIDTSRFNESMVASNECNDVNNKVTLDQSKNNHIQF--HSTHFDIRS 525
           L  K          S      C D+  ++++ Q + +H+QF  HS H ++RS
Sbjct: 217 LQLK---------SSATYGKSCQDLQREISILQEQISHLQFVIHSQHQNLRS 259


>AF273051-1|AAG34911.1|  335|Homo sapiens CTCL tumor antigen se57-1
           protein.
          Length = 335

 Score = 37.1 bits (82), Expect = 0.21
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 18/112 (16%)

Query: 422 VNKRVWKLKKLKAQNSGAKKI--RLDEKHT-LLELDLAVKREEDLNET---KRLSFESED 475
           VNK + K +KLK       ++  +L+EKH+ + EL+  V+R E    T   ++LS E++ 
Sbjct: 158 VNK-LEKEQKLKQHVENLNQVAEKLEEKHSQITELENLVQRMEKEKRTLLERKLSLENKL 216

Query: 476 LLTKLGIDTSRFNESMVASNECNDVNNKVTLDQSKNNHIQF--HSTHFDIRS 525
           L  K          S      C D+  ++++ Q + +H+QF  HS H ++RS
Sbjct: 217 LQLK---------SSATYGKSCQDLQREISILQEQISHLQFVIHSQHQNLRS 259


>AK128159-1|BAC87304.1|  822|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46282 fis, clone TESTI4031066. ).
          Length = 822

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 14/172 (8%)

Query: 430 KKLKAQNSGAKKIRLDEKHTLLELDLAVKR-EEDLNETKRLSFESEDLLTKLGIDTSRFN 488
           K L  QN   K +   ++H   EL+  + + + +L+  K    + ++   KL  +   F 
Sbjct: 75  KFLNLQNEHEKALGTWKRHAE-ELNGEINKIKNELSSLKETHIKLQEHYNKL-CNQKTFE 132

Query: 489 ESMVASN--ECNDVNNKVTLDQSKNNHIQFHSTHFDIRSSPIKP--TSTVFRKFQITPDK 544
           E     N  E N+ N++++ ++S+N  IQ ++T  +IR   ++   + T +R+ +   + 
Sbjct: 133 EDKKFQNVPEVNNENSEMSTEKSENTIIQKYNTEQEIREENMENFCSDTEYREKEEKKEG 192

Query: 545 LSNYDGQIIGAVNMVDKAFEETNNINGLINNDIELPCKENAIDQSWILSSDK 596
            S  +  II  + + +K+F+  N I+ +++ D      ++ I  S  LS DK
Sbjct: 193 -SFIEEIIIDDLQLFEKSFK--NEIDTVVSQDE----NQSEISLSKTLSLDK 237


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.313    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,899,256
Number of Sequences: 224733
Number of extensions: 4150660
Number of successful extensions: 7369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7369
Number of HSP's gapped (non-prelim): 3
length of query: 687
length of database: 73,234,838
effective HSP length: 95
effective length of query: 592
effective length of database: 51,885,203
effective search space: 30716040176
effective search space used: 30716040176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 69 (31.9 bits)