GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001055-TA|BGIBMGA001055-PA|undefined
         (687 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-2|AAB37549.2|  429|Caenorhabditis elegans Saposin-like pr...    36   0.095
AC025716-12|AAK39604.1|  704|Caenorhabditis elegans Hypothetical...    34   0.29 
U80836-13|AAB37897.1|  190|Caenorhabditis elegans Hypothetical p...    34   0.38 
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    32   1.2  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    31   2.0  
Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr...    31   2.7  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    31   2.7  
AL110484-3|CAB54394.1|  243|Caenorhabditis elegans Hypothetical ...    31   2.7  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    30   4.7  
U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical pr...    30   6.3  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    30   6.3  
AF125962-2|AAY86293.1|  232|Caenorhabditis elegans Hypothetical ...    30   6.3  
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr...    29   8.3  
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr...    29   8.3  
Z92788-8|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr...    29   8.3  
Z92788-7|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr...    29   8.3  
Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical pr...    29   8.3  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    29   8.3  
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ...    29   8.3  
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ...    29   8.3  
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote...    29   8.3  
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote...    29   8.3  
AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical ...    29   8.3  

>U40797-2|AAB37549.2|  429|Caenorhabditis elegans Saposin-like
           protein family protein10, isoform b protein.
          Length = 429

 Score = 35.9 bits (79), Expect = 0.095
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 583 ENAIDQSWILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSNISDVTQDILTNVC 642
           EN +D  W  ++ K+  G T   S  E   + V+D  T+ +++ R  +SD  +D      
Sbjct: 238 ENEVDAFWNGAAMKNNKGQTLAMSCFECKFV-VEDMQTDMITN-RKKLSDDVRDFACYKI 295

Query: 643 SESNQSDSVLNFLD 656
             +N +DS ++FLD
Sbjct: 296 VTANMTDSCIDFLD 309


>AC025716-12|AAK39604.1|  704|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.15 protein.
          Length = 704

 Score = 34.3 bits (75), Expect = 0.29
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 92  PKTEPSKPYVLNNVILKPS--LPAVSNTRKINLQSTEQKTPNTIPVFGIDRKIVKLKDGM 149
           PK EP +P  L   + +P    PA+   +KI+ Q+T+ K    I     DRKI K KD  
Sbjct: 127 PKLEPEQPEKLERPLARPQPPPPAIPVVKKISKQNTKDKKSGRI----TDRKIHKKKDAA 182

Query: 150 LTRRNR 155
               N+
Sbjct: 183 TQDDNK 188


>U80836-13|AAB37897.1|  190|Caenorhabditis elegans Hypothetical
           protein B0432.11 protein.
          Length = 190

 Score = 33.9 bits (74), Expect = 0.38
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 419 WPTVNKRVWKLKKLKAQNSGAKKIRLDEKHT-LLELDLAVKREEDLNETKRLSFESEDLL 477
           W    K+ WK +K   +    KK   D +HT ++E++L         E+K  + E + + 
Sbjct: 106 WLRGRKKAWKSRKGSKKGKKPKKTETDSQHTQVIEMELGKAARSGEGESKLTAKEDQKVN 165

Query: 478 TKLGIDTSRFNESMVAS 494
            K    T +F + +V S
Sbjct: 166 EKPDGKTVQFADKLVKS 182


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 453 LDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFNESMVASNECNDVNNKVTLDQSKNN 512
           L+  +K++ +L  T+ +    E L T LGID    +  +V   + N    K+T DQ +++
Sbjct: 179 LEKKIKKKSELTSTEAIELAIEALQTSLGIDVRSKDLEVVVVTKDNSKFTKLTSDQVEHH 238


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 15/128 (11%)

Query: 414 SSAENWPTVNKRVWKL----KKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNETKRL 469
           S +EN  T+  ++ KL    KKLK  N    K R      + EL+  +KRE D  +  + 
Sbjct: 155 SQSEN-ETMKSKISKLTESEKKLKETNGKVTKSRNQLSERVSELEAQLKREADTAQKPKQ 213

Query: 470 SFESEDLLTKLGIDTSRFNESMVASNECNDVNNKVTLDQSKNNHIQFHSTHFDIRSSPIK 529
           +    DLL K+G    R N+ + +  +    N +V  ++      +  ST+  ++   + 
Sbjct: 214 A--DPDLLNKVG----RLNDLLTSEKQ----NTRVLQEEVAKFKAELESTNKTMKQKLVH 263

Query: 530 PTSTVFRK 537
              T+ ++
Sbjct: 264 ERKTLIKE 271


>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical
           protein ZC434.5 protein.
          Length = 1149

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 548 YDGQIIGAVNMVDKAFEETNNINGLINNDIELPCKENAIDQSWILSSDKSEDGFTKPDSL 607
           ++GQ+I   +  + A +E  +   +I  D+ +    N +   W  SSD  E   T  + L
Sbjct: 224 FEGQLIMRFDDTNPA-KENAHFEHVIKEDLSML---NIVPDRWTHSSDHFEMLLTMCEKL 279

Query: 608 IEPSLIHVKDTDTNKVSSTRSNISD 632
           ++     V DTDT  + + R    D
Sbjct: 280 LKEGKAFVDDTDTETMRNEREQRQD 304


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 421 TVNKRVW---KLKKLKAQNSGAKKIRLDEKHTLLELDLAVKREEDLNETKRLSFESEDLL 477
           T+NK V+   +++ LK+++   +K+ LDE H L     A++ + D  E + L    +  L
Sbjct: 381 TINKEVFSNSEIETLKSEHEIVRKLMLDEIHRLENEMSALQPKNDTTELEEL----QKTL 436

Query: 478 TKLGIDTSRFNESMV-ASNECNDVNNKVT 505
             L ID       M+   +E  +V  K T
Sbjct: 437 DDLKIDCCNLTSKMLELQSELVEVKEKAT 465


>AL110484-3|CAB54394.1|  243|Caenorhabditis elegans Hypothetical
           protein Y38E10A.3 protein.
          Length = 243

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 383 QSNVEVNQPSELLITNHEEAMIPDTEDCARISSAENWPTVNKRVWKLKKLKAQNSGAKKI 442
           Q N++++QPS   + ++ +  I   ++  R    E    + K + + K    +N  A+K 
Sbjct: 116 QMNIQLDQPSRDQVADYLQFEIRTVKEVLRQKEEE----LEKLMAENKYNYFENC-AEKC 170

Query: 443 RLDEKHTLLELDLAVKREEDLNETKRLSFESEDLLTKLGIDTSRFNESMVASN 495
           R+ E+ +    +  + R+E     K ++ +SE+LL +L   T +  E  +  N
Sbjct: 171 RIQEETSAARREADLLRDEMKTLVKNMNAKSEELLGQLRDSTEKCEEMEIDCN 223


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 7   ATIVD-SSQLTPVYLINPNDSQANYII-------TLGDVEQKPISDNLKSFYEKSGSIEN 58
           +T+VD SSQ    Y+ +P  + +N  +         G   Q P S    +    SGS E+
Sbjct: 548 STVVDTSSQFQIPYVSSPASATSNIFVGPIPPPSNSGSSSQAPDSSQSATNSSNSGSGES 607

Query: 59  SIPNVIKAPAPRTIKKIDPAAVG--NNLKLASFLLPKTEPSKPYVLNNVILKPSLP 112
            IPNV     P  + ++     G  +   + S    KTE S     + ++   S P
Sbjct: 608 KIPNVGPIAPPSQLSQVGVFVTGSTSTSPVVSINFIKTENSVQQPTHYIVPSQSSP 663


>U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical
           protein K06B9.2 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 79  AVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPNTIPVFG 137
           A+ N   +A+  +PK    K  ++ +V L   LP V    ++  +  EQKTP+   +FG
Sbjct: 164 AISNEADVATKCVPK---QKGELVGSVFLDRGLPRVVEYSELGAELAEQKTPDGKYLFG 219


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 67   PAPRTIKKIDPAAVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTE 126
            PA +T     P   GNN +     +P      P     V  K S+P  +   K  ++ +E
Sbjct: 1296 PAKKTTPGPSPKPKGNNQRKKHVQVP------PVTKTPVTPKTSIPPPTEPEK-PIKPSE 1348

Query: 127  QKTPNTIPV 135
            QK PN IPV
Sbjct: 1349 QKKPNAIPV 1357


>AF125962-2|AAY86293.1|  232|Caenorhabditis elegans Hypothetical
           protein Y39H10B.2 protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 446 EKHTLLELDLAVKREEDLNETKRLSFESEDLLTKL------GIDTSRFNESMVASNECND 499
           EK T LEL L    E    +   L+ + ED+  KL        DT + NE  V+ N  +D
Sbjct: 161 EKFTALELQLQETNERMQKQLDELNAKFEDVNRKLQKASDCNADTEKENEEGVSDNGTDD 220

Query: 500 VNNKVTLDQS 509
             + VT+ +S
Sbjct: 221 SWDVVTVQRS 230


>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
            ZK1151.1c protein.
          Length = 4955

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 445  DEKHTLLEL--DLAVKRE-EDLNET-KRLSFESEDLLTKLGIDTSRFNESMVASNEC 497
            D +H+  EL  + +V++E +D+N+  K+L  E EDL  +     SR N++    NEC
Sbjct: 2083 DARHSARELAREASVEKEVQDMNQREKKLLDEWEDLADQFDAVRSRANKAEQVLNEC 2139


>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
            ZK1151.1b protein.
          Length = 4944

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 445  DEKHTLLEL--DLAVKRE-EDLNET-KRLSFESEDLLTKLGIDTSRFNESMVASNEC 497
            D +H+  EL  + +V++E +D+N+  K+L  E EDL  +     SR N++    NEC
Sbjct: 2083 DARHSARELAREASVEKEVQDMNQREKKLLDEWEDLADQFDAVRSRANKAEQVLNEC 2139


>Z92788-8|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
            ZK1151.1c protein.
          Length = 4955

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 445  DEKHTLLEL--DLAVKRE-EDLNET-KRLSFESEDLLTKLGIDTSRFNESMVASNEC 497
            D +H+  EL  + +V++E +D+N+  K+L  E EDL  +     SR N++    NEC
Sbjct: 2083 DARHSARELAREASVEKEVQDMNQREKKLLDEWEDLADQFDAVRSRANKAEQVLNEC 2139


>Z92788-7|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
            ZK1151.1b protein.
          Length = 4944

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 445  DEKHTLLEL--DLAVKRE-EDLNET-KRLSFESEDLLTKLGIDTSRFNESMVASNEC 497
            D +H+  EL  + +V++E +D+N+  K+L  E EDL  +     SR N++    NEC
Sbjct: 2083 DARHSARELAREASVEKEVQDMNQREKKLLDEWEDLADQFDAVRSRANKAEQVLNEC 2139


>Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical
           protein C36A4.4 protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 79  AVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPNTIPVFG 137
           A+ N   +A+  +PK    K  ++ +V L   LP V    ++  +  EQKTP+   +FG
Sbjct: 270 AISNEADVATKCVPK---QKGELVGSVCLDRGLPRVVEYSELGAELAEQKTPDGKYLFG 325


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 563 FEETNNINGLINNDIEL-PCKE-NAIDQSWILSSDKSEDGFTKP-----DSLIEPSLIHV 615
           F+ +  I+ + N+++++ P  + N    SW    + +  G T       DS +E      
Sbjct: 62  FDVSTTISSINNDNVDIGPSGDSNPTGSSWFQEIEATVGGQTVKSEHNIDSSVEVEKKVT 121

Query: 616 KDTDTNKVSSTRSNISDVTQDILTNVCSESNQSDSVLNFLDSLGSTCLS 664
             TD +  ++  +     T +I+T +   +++S+SV +   +  ST LS
Sbjct: 122 TSTDASTTNAPTTGKDSTTPEIITGIVVINSKSESVTDMSTTRFSTTLS 170


>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
            protein ZK1151.1c protein.
          Length = 4955

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 445  DEKHTLLEL--DLAVKRE-EDLNET-KRLSFESEDLLTKLGIDTSRFNESMVASNEC 497
            D +H+  EL  + +V++E +D+N+  K+L  E EDL  +     SR N++    NEC
Sbjct: 2083 DARHSARELAREASVEKEVQDMNQREKKLLDEWEDLADQFDAVRSRANKAEQVLNEC 2139


>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
            protein ZK1151.1b protein.
          Length = 4944

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 445  DEKHTLLEL--DLAVKRE-EDLNET-KRLSFESEDLLTKLGIDTSRFNESMVASNEC 497
            D +H+  EL  + +V++E +D+N+  K+L  E EDL  +     SR N++    NEC
Sbjct: 2083 DARHSARELAREASVEKEVQDMNQREKKLLDEWEDLADQFDAVRSRANKAEQVLNEC 2139


>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
            protein.
          Length = 3522

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 445  DEKHTLLEL--DLAVKRE-EDLNET-KRLSFESEDLLTKLGIDTSRFNESMVASNEC 497
            D +H+  EL  + +V++E +D+N+  K+L  E EDL  +     SR N++    NEC
Sbjct: 2083 DARHSARELAREASVEKEVQDMNQREKKLLDEWEDLADQFDAVRSRANKAEQVLNEC 2139


>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
            protein.
          Length = 4944

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 445  DEKHTLLEL--DLAVKRE-EDLNET-KRLSFESEDLLTKLGIDTSRFNESMVASNEC 497
            D +H+  EL  + +V++E +D+N+  K+L  E EDL  +     SR N++    NEC
Sbjct: 2083 DARHSARELAREASVEKEVQDMNQREKKLLDEWEDLADQFDAVRSRANKAEQVLNEC 2139


>AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical
           protein T27C4.1 protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 78  AAVGNNLKLASFLLPKTEPSKPYVL-----NNVILKPSLPAVSNTRKINLQSTEQKTPNT 132
           AA+    + A+F  P   P++P V      +NV    S P         +Q +E+K+P T
Sbjct: 173 AAMVGTTRFAAFASPDNSPNEPPVRVFPHSSNVAGMSSGPVPVMEEIAKVQPSEKKSPTT 232

Query: 133 IPVFGIDRKI 142
           +P   +D+++
Sbjct: 233 VPTDLLDQEV 242


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,722
Number of Sequences: 27539
Number of extensions: 791785
Number of successful extensions: 2030
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2011
Number of HSP's gapped (non-prelim): 40
length of query: 687
length of database: 12,573,161
effective HSP length: 86
effective length of query: 601
effective length of database: 10,204,807
effective search space: 6133089007
effective search space used: 6133089007
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)