GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001055-TA|BGIBMGA001055-PA|undefined
         (687 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    28   0.22 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     28   0.22 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    27   0.51 

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 18/83 (21%), Positives = 32/83 (38%)

Query: 23  PNDSQANYIITLGDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPAAVGN 82
           P +     ++   ++ ++P S  L+  YE  G    SIP V      +T   I       
Sbjct: 35  PREMNTERLLPYVEIIEQPASKALRFRYECEGRSAGSIPGVNSTSENKTFPTIKIVGYKG 94

Query: 83  NLKLASFLLPKTEPSKPYVLNNV 105
              +    + K +P +P+  N V
Sbjct: 95  RALVVVSCVTKDQPYRPHPHNLV 117


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 18/83 (21%), Positives = 32/83 (38%)

Query: 23  PNDSQANYIITLGDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPAAVGN 82
           P +     ++   ++ ++P S  L+  YE  G    SIP V      +T   I       
Sbjct: 35  PREMNTERLLPYVEIIEQPASKALRFRYECEGRSAGSIPGVNSTSENKTFPTIKIVGYKG 94

Query: 83  NLKLASFLLPKTEPSKPYVLNNV 105
              +    + K +P +P+  N V
Sbjct: 95  RALVVVSCVTKDQPYRPHPHNLV 117


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 0.51
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 531 TSTVFRKFQITPDKLSNYDGQIIGAVNMVDKAFEETNNINGLINNDIELPCKENAIDQSW 590
           TS + ++ +I  D  +   G++   V++  +A + TN +  +++N   L   +NA D   
Sbjct: 166 TSQLLKQVEIPHDVATTGKGEL---VSLTVQAMDSTNTMVYMVDNKNTLIIYQNADDSFH 222

Query: 591 ILSSDKSEDGFTKPDSLIEPSLIHVKDTDTNKVSSTRSNISDVTQDILTNVCSESN 646
            LSS        K     +   + +K+ D NKV      +S VT ++  N  S  N
Sbjct: 223 RLSSHTLNHNSDKMSD--QQENLTLKEVD-NKVYGMA--LSPVTHNLYYNSPSSEN 273


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,021
Number of Sequences: 429
Number of extensions: 9015
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 687
length of database: 140,377
effective HSP length: 62
effective length of query: 625
effective length of database: 113,779
effective search space: 71111875
effective search space used: 71111875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)