Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001054-TA|BGIBMGA001054-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
         (392 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   7.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   7.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 6/30 (20%)

Query: 193 KCFSDTETLCND------NKFKCDNCSSYQ 216
           K   D + L ND      +  KCD CS+YQ
Sbjct: 128 KSLDDVKILRNDRIDSYKSNLKCDKCSTYQ 157



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 192 LKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPL 229
           LKC   +    N  +   +NC+ YQ+  + + V ++ L
Sbjct: 148 LKCDKCSTYQSNGEEVCLENCTGYQQYLRLLEVPQINL 185


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 219 QKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVV 255
           +K + V   P++   HLK  KY++   R+   + +++
Sbjct: 350 EKTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKII 386


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 219 QKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVV 255
           +K + V   P++   HLK  KY++   R+   + +++
Sbjct: 350 EKTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKII 386


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 219 QKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVV 255
           +K + V   P++   HLK  KY++   R+   + +++
Sbjct: 350 EKTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKII 386


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 318 LYDLVAVVVHCGSGPNRGHYISIVKSHGFWLLF 350
           L  +V   VH       GHY S V  + F +LF
Sbjct: 751 LGSIVGTPVHMAPELLSGHYDSSVDVYAFGILF 783


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 318 LYDLVAVVVHCGSGPNRGHYISIVKSHGFWLLF 350
           L  +V   VH       GHY S V  + F +LF
Sbjct: 789 LGSIVGTPVHMAPELLSGHYDSSVDVYAFGILF 821


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,281
Number of Sequences: 429
Number of extensions: 4732
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 7
length of query: 392
length of database: 140,377
effective HSP length: 59
effective length of query: 333
effective length of database: 115,066
effective search space: 38316978
effective search space used: 38316978
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)