Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001054-TA|BGIBMGA001054-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
(392 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 309 2e-84
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 303 9e-83
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 109 4e-24
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 105 4e-23
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 105 5e-23
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 102 5e-22
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 101 1e-21
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 100 2e-21
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 93 3e-19
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 91 9e-19
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 85 1e-16
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 80 2e-15
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 80 2e-15
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 80 3e-15
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 79 7e-15
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 71 1e-12
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative... 60 3e-09
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 58 1e-08
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 54 1e-07
At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putativ... 54 2e-07
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putativ... 54 2e-07
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 53 4e-07
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 53 4e-07
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 52 7e-07
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 51 2e-06
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 51 2e-06
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 51 2e-06
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 49 6e-06
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 49 6e-06
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ... 47 2e-05
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ... 47 2e-05
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 40 0.002
At4g22410.1 68417.m03238 ubiquitin carboxyl-terminal hydrolase f... 38 0.015
At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase f... 37 0.027
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r... 31 1.0
At4g22350.1 68417.m03231 ubiquitin carboxyl-terminal hydrolase f... 31 1.3
At5g50840.1 68418.m06298 expressed protein 31 1.8
At5g50840.2 68418.m06299 expressed protein 30 2.3
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 5.4
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 29 5.4
At2g20510.1 68415.m02395 mitochondrial import inner membrane tra... 29 7.1
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 309 bits (759), Expect = 2e-84
Identities = 153/262 (58%), Positives = 191/262 (72%), Gaps = 7/262 (2%)
Query: 11 FQHRMFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKR-TKETLLTCLADLFYSIATQKK 69
F FGNTCY NSVLQALYFC PFRE++LE+ A NK +E LLTCLADLF I++QKK
Sbjct: 23 FGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNKADAEENLLTCLADLFSQISSQKK 82
Query: 70 KVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNS 129
K G IAPK+F+ RL+K+ E F +YM QDAHEFLN+L+N + EI+ E + + ++S
Sbjct: 83 KTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVEILEKETQATKADNETSSS 142
Query: 130 GENVTCNGSVPH----NTEP--TWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVG 183
E + P + EP TWVH+IFQG LT+ETRCL CETV+++DE F DL +D+
Sbjct: 143 PEKIANVLKAPLANGVHKEPIVTWVHKIFQGILTNETRCLRCETVTARDETFLDLSLDIE 202
Query: 184 QNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQ 243
QN+SIT CLK FS TETL ++KF CD C S QEAQKRM++KK P IL +HLKRFKYMEQ
Sbjct: 203 QNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQ 262
Query: 244 FNRHIKVSHRVVFPLELRLFNT 265
R+ K+S+RVVFPLEL+L NT
Sbjct: 263 LGRYKKLSYRVVFPLELKLSNT 284
Score = 92.3 bits (219), Expect = 5e-19
Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 298 VKPKKEKKNRKSDDAVNPDRLYDLVAVVVHCGSGPNRGHYISIVKSHGFWLLFDDDMVDK 357
V P + K + D+ V+ + Y L AVVVH GSGPN GHY+S+VKSH WL FDD+ V+
Sbjct: 274 VFPLELKLSNTVDEYVDIE--YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDESVEI 331
Query: 358 IDASAIEDFYGLTSDIQKSSETGYILFYQS 387
I+ SA++ F+G + + +++ GYIL Y+S
Sbjct: 332 IEESAVQTFFGSSQEYSSNTDHGYILLYES 361
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 303 bits (745), Expect = 9e-83
Identities = 151/267 (56%), Positives = 192/267 (71%), Gaps = 12/267 (4%)
Query: 11 FQHRMFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRT---KETLLTCLADLFYSIATQ 67
F FGNTCY NSVLQALYFC PFRE++LEY NK +E L+TCLADLF I++Q
Sbjct: 23 FGFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKSVADAEENLMTCLADLFSQISSQ 82
Query: 68 KKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIIL--AERNQSTLKVQ 125
KKK G IAPK+F+ RL+K+ E F +YM QDAHEFLN+L+N + +I+ A+ ++ +
Sbjct: 83 KKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNEVVDILEKEAKATKTEHETS 142
Query: 126 KNNSGENVTCNGSVPH-----NTEP--TWVHEIFQGTLTSETRCLNCETVSSKDEHFFDL 178
++S E + VP + EP TWVH IFQG LT+ETRCL CETV+++DE F DL
Sbjct: 143 SSSSPEKIANGLKVPQANGVVHKEPIVTWVHNIFQGILTNETRCLRCETVTARDETFLDL 202
Query: 179 QVDVGQNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRF 238
+D+ QN+SIT CLK FS TETL ++KF CD C S QEAQKRM++KK P IL +HLKRF
Sbjct: 203 SLDIEQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRF 262
Query: 239 KYMEQFNRHIKVSHRVVFPLELRLFNT 265
KY+EQ R+ K+S+RVVFPLEL+L NT
Sbjct: 263 KYIEQLGRYKKLSYRVVFPLELKLSNT 289
Score = 95.1 bits (226), Expect = 7e-20
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 308 KSDDAVNP--DRLYDLVAVVVHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIDASAIED 365
K + V P D Y L AVVVH GSGPN GHY+S+VKSH WL FDD+ V+ I+ SA++
Sbjct: 285 KLSNTVEPYADVEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIEESAVQT 344
Query: 366 FYGLTSDIQKSSETGYILFYQS 387
F+G + + +++ GYILFY+S
Sbjct: 345 FFGSSQEYSSNTDHGYILFYES 366
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 109 bits (261), Expect = 4e-24
Identities = 78/248 (31%), Positives = 120/248 (48%), Gaps = 23/248 (9%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTK-ETLLTCLADLFYSIATQKKKVGSIA 75
GN+C++N +LQ L + RP +LE K + + + C A+Q + +
Sbjct: 174 GNSCFANVILQCLSWTRPLVAYLLEKGHKRECMRNDWCFLCEFQTHVERASQSRF--PFS 231
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
P I+RL Q+DAHEF+ + I+ + + L E GE +
Sbjct: 232 PMNIISRLTNIGGTLGYGRQEDAHEFMRYAIDMMQSVCLDEFG-----------GEKIV- 279
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDV-GQNTSITHCLKC 194
P + E T + IF G L S+ +C C VS + E+ DL V++ G S+ CL
Sbjct: 280 ---PPRSQETTLIQYIFGGLLQSQVQCTVCNHVSDQYENMMDLIVEMHGDAGSLEECLDQ 336
Query: 195 FSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRV 254
F+ E L DN +KCD CS Y +A KR+ +++ P IL + LKR+ Q R+ K++ R+
Sbjct: 337 FTAEEWLHGDNMYKCDRCSDYVKACKRLTIRRAPNILTIALKRY----QGGRYGKLNKRI 392
Query: 255 VFPLELRL 262
FP L L
Sbjct: 393 SFPETLDL 400
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 105 bits (253), Expect = 4e-23
Identities = 78/243 (32%), Positives = 112/243 (46%), Gaps = 23/243 (9%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNK-RTKETLLTCLADLFYSIATQKKKVGSIA 75
GN+C++N VLQ L + RP +LE K + R + C + A + +
Sbjct: 180 GNSCFANVVLQCLSWTRPLVAYLLERGHKRECRRNDWCFLCEFENHLDRANYSRF--PFS 237
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
P I+RL Q+DAHE + F I+ + + L E GE V
Sbjct: 238 PMNIISRLPNIGGNLGYGRQEDAHELMRFAIDMMQSVCLDEFG-----------GEKVV- 285
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDV-GQNTSITHCLKC 194
P E T + IF G L S+ +C C VS + E+ DL V++ G S+ CL
Sbjct: 286 ---PPRAQETTLIQYIFGGLLQSQVQCTACSNVSDQYENMMDLTVEIHGDAVSLEECLDQ 342
Query: 195 FSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRV 254
F+ E L DN +KCD C Y +A KR+ ++ P IL + LKRF Q R K++ R+
Sbjct: 343 FTAKEWLQGDNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRF----QGGRFGKLNKRI 398
Query: 255 VFP 257
FP
Sbjct: 399 SFP 401
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 105 bits (252), Expect = 5e-23
Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 23/232 (9%)
Query: 14 RMFGNTCYSNSVLQALYFCRPFREKVLEYKAKNK-------RTKETLLTCLADLFYSIAT 66
R GNTCY NSVLQ L F P L +K + K C+ + + +
Sbjct: 27 RNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSSHCDTYVDGERKRDCPFCIVEKRIA-RS 85
Query: 67 QKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQK 126
+ + AP K + L+ E F Q+DAHEFL ++I+ + ++L+++K
Sbjct: 86 LSVDLTTDAPNKISSCLKIFAEHFKLGRQEDAHEFLRYVIDACHN--------TSLRLKK 137
Query: 127 NNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNT 186
+ NG+ P N V EIF G L S+ +CL+C S+K + D+ +++ Q++
Sbjct: 138 ------LRYNGNEPFNGNSV-VKEIFGGALQSQVKCLSCGAESNKADEIMDISLEILQSS 190
Query: 187 SITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRF 238
S+ L+ F +E L +NK++C++C A+K+M + + P IL + LKRF
Sbjct: 191 SVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPNILVIQLKRF 242
Score = 36.7 bits (81), Expect = 0.027
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 306 NRKSDDAVNPDRLYDLVAVVVHCGSGPNRGHYISIVK-SHGFWLLFDDDMV 355
N S + +P Y L ++VH G P GHY + VK S G W +D V
Sbjct: 264 NFMSKASKDPQPEYKLFGIIVHSGFSPESGHYYAYVKDSLGRWYCCNDSFV 314
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 102 bits (244), Expect = 5e-22
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 24/242 (9%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSI-A 75
GNTC+ NSVLQ L + P L+ A K L + + T ++ G I A
Sbjct: 113 GNTCFLNSVLQCLTYTEPLAA-TLQTAAHQKYCHVAGFCALCAIQKHVRTARQANGRILA 171
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
PK ++ LR F N Q+DAHE++ L+ +++ L SG V
Sbjct: 172 PKDLVSNLRCISRNFRNCRQEDAHEYMINLLECMHKCSLP-------------SG--VPS 216
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCF 195
S + + VH+IF G+L S+ +C C S+K + F DL +D+ + S+ L F
Sbjct: 217 ESSDAYRR--SLVHKIFGGSLRSQVKCEQCSHCSNKFDPFLDLSLDISKADSLQRALSRF 274
Query: 196 SDTETLCNDNK-FKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRV 254
+ E L N K ++C+ C +A+K++ V K P +L +HLKRF + +R K+ +V
Sbjct: 275 TAVELLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRF----EAHRSEKIDRKV 330
Query: 255 VF 256
F
Sbjct: 331 DF 332
Score = 35.5 bits (78), Expect = 0.062
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 319 YDLVAVVVHCGSGPNRGHYISIVK-SHGFWLLFDDDMVDKIDASAI 363
Y L V+VH G + GHY V+ S G W DD+ V ++ +
Sbjct: 352 YTLYGVLVHYGRSSHSGHYACFVRTSSGMWYSLDDNRVVQVSEKTV 397
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 101 bits (241), Expect = 1e-21
Identities = 67/248 (27%), Positives = 124/248 (50%), Gaps = 23/248 (9%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLE-YKAKNKRTKETLLTCLADLFYSIATQKKKVGSIA 75
GN+C++N V Q L F P L+ + ++ KE TC + + K++ ++
Sbjct: 548 GNSCFANVVFQCLMFTPPLTTYFLQQFHSRACTKKEQCFTCGFEKL--VVKAKEEKSPLS 605
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
P +++L+ N ++DAHEFL F+++ + + + S + K++ E+ T
Sbjct: 606 PNGLLSQLQNIGIFLGNGKEEDAHEFLRFVVDTMQSVCI---KASEYDMTKSSKLEDTTL 662
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDV-GQNTSITHCLKC 194
G F G L S+ +C+ C+ S E DL V++ G +++ L+
Sbjct: 663 IGLT------------FGGYLRSKIKCMKCQVKSELREKMMDLTVEIDGDISTLDDALRR 710
Query: 195 FSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRV 254
F+ TE L +NK++C +C SY+ A+K++++ + P +L + LKRF Q + K++ +
Sbjct: 711 FTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRF----QAGKFGKLNKLI 766
Query: 255 VFPLELRL 262
FP L L
Sbjct: 767 RFPETLDL 774
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 100 bits (239), Expect = 2e-21
Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 23/243 (9%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYK-AKNKRTKETLLTCLADLFYSIATQKKKVGSIA 75
GN+CY+N+VLQ+L +P +L +++ K+ L C +L + ++ G ++
Sbjct: 444 GNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCSGKDWCLMC--ELEQHVMMLRESGGPLS 501
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
+ ++ +R + + Q+DAHEFL L+ + I L ER KV
Sbjct: 502 ASRILSHMRSINCQIGDGSQEDAHEFLRLLVASMQSICL-ERLGGETKVD---------- 550
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDV-GQNTSITHCLKC 194
P E T V +F G L S+ +CL C+ S + E+ DL +++ G S+ L
Sbjct: 551 ----PRLQETTLVQHMFGGRLRSKVKCLRCDHESERYENIMDLTLEIYGWVESLQDALTQ 606
Query: 195 FSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRV 254
F+ E L +N ++C C+ Y A+K + + + P IL + LKRF Q R+ K++ +
Sbjct: 607 FTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRF----QEGRYGKINKCI 662
Query: 255 VFP 257
FP
Sbjct: 663 SFP 665
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 93.1 bits (221), Expect = 3e-19
Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 23/238 (9%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLE-YKAKNKRTKETLLTCLADLFYSIATQKKKVGSIA 75
GN+CY+N+VLQ L F RP ++ +K R K C + + I + ++
Sbjct: 335 GNSCYANAVLQCLAFTRPLISYLIRGLHSKTCRKKSWCFVC--EFEHLILKARGGESPLS 392
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
P K +++L+K + ++DAHEFL ++ + + L E
Sbjct: 393 PIKILSKLQKIGKHLGPGKEEDAHEFLRCAVDTMQSVFLKE------------------A 434
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDV-GQNTSITHCLKC 194
+ P E T V F G L S+ +C+ C S + E DL V++ G S+ L
Sbjct: 435 PAAGPFAEETTLVGLTFGGYLHSKIKCMACLHKSERPELMMDLTVEIDGDIGSLEEALAQ 494
Query: 195 FSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSH 252
F+ E L +N++ C C SYQ+A+K++ + + P IL + LKRF+ + F + K H
Sbjct: 495 FTAYEVLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQ-SDNFGKLSKPIH 551
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 91.5 bits (217), Expect = 9e-19
Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 31/240 (12%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLE--YKAKNKRTKETLLTCLADLFYSIATQKKKVGSI 74
GN+C+ NSV Q P E +L Y+ E A ++ A + + I
Sbjct: 182 GNSCFLNSVFQCFTHTVPLIESLLSFRYEVPCHCGNEFFCVIRAIRYHIEAALRPERCPI 241
Query: 75 APKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVT 134
AP F L +F Y Q+DAHEFL + + EI ++R +
Sbjct: 242 APYFFFDNLNYFSPDFQRYQQEDAHEFLQAFLEKL-EICGSDRT---------------S 285
Query: 135 CNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKC 194
G + ++F G L S RC NC+ VS E L +++ ++ L+
Sbjct: 286 FRGDITSQ-------DVFSGRLISGLRCCNCDYVSETYEKSVGLSLEIEDVDTLGSALES 338
Query: 195 FSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFK----YMEQFNRHIKV 250
F+ E L D + CDNC+ +K++ + KLPL+ HLKRFK YME+ +H+K+
Sbjct: 339 FTRVEKL--DEQLTCDNCNEKVSKEKQLLLDKLPLVATFHLKRFKNNGLYMEKIYKHVKI 396
Score = 34.3 bits (75), Expect = 0.14
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 319 YDLVAVVVHCGSGPNRGHYISIVKS-HGFWLLFDDDMVDKIDASAI 363
Y L A+V H G GHY S V+S W FDD V +ID +
Sbjct: 418 YHLYALVEHFGYSVAYGHYSSYVRSAPKIWHHFDDSKVTRIDEDMV 463
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 84.6 bits (200), Expect = 1e-16
Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 37/245 (15%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSI-ATQKKKVGSIA 75
G TCY+NS+LQ LY FRE V + + + +L +A LF + A+QK V S A
Sbjct: 112 GATCYANSILQCLYMNTAFREGVFSVEVHVLK-QNPVLDQIARLFAQLHASQKSFVDSDA 170
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
F+ L E DN +QQD HEFL L++ + +L S +K +
Sbjct: 171 ---FVKTL-----ELDNGVQQDTHEFLTLLLSLLERCLL----HSGVKAK---------- 208
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNC---ETVSSKDEHFFDLQVDVGQNTSITHCL 192
T V ++F G+++ T C C SSK E F+ L+++V S+ L
Sbjct: 209 ----------TIVQDLFSGSVSHVTTCSKCGRDSEASSKMEDFYALELNVKGLKSLDASL 258
Query: 193 KCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSH 252
+ E L DN++ C +C++ +A + ++++ LP ++ LKR ++ + K++
Sbjct: 259 NDYLSLEQLNGDNQYFCGSCNARVDATRCIKLRTLPPVITFQLKRCIFLPKTTAKKKITS 318
Query: 253 RVVFP 257
FP
Sbjct: 319 SFSFP 323
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 319 YDLVAVVVHCGSGPNRGHYISIVKSH--GFWLLFDDDMVDKI 358
YDL AV++H GS N GHY++ +K G W FDD+ V ++
Sbjct: 342 YDLSAVLIHKGSAVNSGHYVAHIKDEKTGLWWEFDDEHVSEL 383
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 80.2 bits (189), Expect = 2e-15
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 33/247 (13%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKA-KNKRTKETLLTCLADLFYSIATQKKKVGSIA 75
G TCY NS+LQ LY FR+ V +N ++ L LFY + S+A
Sbjct: 204 GATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKLQYNDT---SVA 260
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
K+ + +D++MQ D E +N + L E+ + +K
Sbjct: 261 TKELTKSFGWDT--YDSFMQHDVQE--------LNRV-LCEKLEDKMK------------ 297
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCF 195
G+V T + ++F+G + C+N + S++ E F+DLQ+DV + +
Sbjct: 298 -GTVVEGT----IQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKY 352
Query: 196 SDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVV 255
+ E L DNK+ + Q+A+K + P +L L LKRF+Y + +K++ R
Sbjct: 353 VEVERLEGDNKYHAEG-HGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYE 411
Query: 256 FPLELRL 262
FPLEL L
Sbjct: 412 FPLELDL 418
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 80.2 bits (189), Expect = 2e-15
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 33/247 (13%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKA-KNKRTKETLLTCLADLFYSIATQKKKVGSIA 75
G TCY NS+LQ LY FR+ V +N ++ L LFY + S+A
Sbjct: 205 GATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKLQYNDT---SVA 261
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
K+ + +D++MQ D E +N + L E+ + +K
Sbjct: 262 TKELTKSFGWDT--YDSFMQHDVQE--------LNRV-LCEKLEDKMK------------ 298
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCF 195
G+V T + ++F+G + C+N + S++ E F+DLQ+DV + +
Sbjct: 299 -GTVVEGT----IQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKY 353
Query: 196 SDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVV 255
+ E L DNK+ + Q+A+K + P +L L LKRF+Y + +K++ R
Sbjct: 354 VEVERLEGDNKYHAEG-HGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYE 412
Query: 256 FPLELRL 262
FPLEL L
Sbjct: 413 FPLELDL 419
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 79.8 bits (188), Expect = 3e-15
Identities = 70/274 (25%), Positives = 116/274 (42%), Gaps = 47/274 (17%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKN----KRTKETL-LTCLADLFYSIATQKKKV 71
G+TC+ N+VLQAL P R L + +RT L L C D+ +S +
Sbjct: 183 GSTCFMNAVLQALVHAPPLRNFWLSGQHNRDLCPRRTMGLLCLPCDLDVIFSAMFSGDRT 242
Query: 72 GSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE 131
+P + + Y QQD+HEF L++ I+E +S Q N +
Sbjct: 243 -PYSPAHLLYSWWQHSTNLATYEQQDSHEFFISLLDRIHE----NEGKSKCLYQDNEECQ 297
Query: 132 NVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQV----------- 180
+T H+ F G L S+ C C + S+ + F D+ +
Sbjct: 298 CIT--------------HKAFSGLLRSDVTCTTCGSTSTTYDPFIDISLTLDSMNGFSPA 343
Query: 181 DVGQNT------------SITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLP 228
D +N +++ CL F+ +E L D K C +C +E+ K+M +++LP
Sbjct: 344 DCRKNRYSGGPSVNAIMPTLSGCLDFFTRSEKLGPDQKLNCQSCGEKRESSKQMSIRRLP 403
Query: 229 LILALHLKRFKYMEQFNRHIKVSHRVVFPLELRL 262
L+L LH+KRF++ K+ + +P L +
Sbjct: 404 LLLCLHVKRFEHSLTRKTSRKIDSYLQYPFRLNM 437
Score = 35.5 bits (78), Expect = 0.062
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 309 SDDAVNPDRLYDLVAVVVHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIDASAIED--- 365
S + +P +++ AVV H G + GHY++ ++ G W DD +++++ +
Sbjct: 465 SSSSSSPSAEFEIFAVVTHKGMLES-GHYVTYLRLKGLWYRCDDAWINEVEEEVVRGCEC 523
Query: 366 ---FYGLTSDIQKS 376
FY + IQK+
Sbjct: 524 YMLFYAQETVIQKA 537
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 78.6 bits (185), Expect = 7e-15
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 33/247 (13%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKA-KNKRTKETLLTCLADLFYSIATQKKKVGSIA 75
G TCY NS+LQ LY FR+ V +N ++ L LFY + S+A
Sbjct: 204 GATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKLQYNDT---SVA 260
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
K+ + +D++MQ D E +N + L E+ + +K
Sbjct: 261 TKELTKSFGWDT--YDSFMQHDVQE--------LNRV-LCEKLEDKMK------------ 297
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCF 195
G+V T + ++F+G + C+N + S++ E F+DLQ+DV + +
Sbjct: 298 -GTVVEGT----IQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKY 352
Query: 196 SDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVV 255
+ E L DNK+ + Q+A+K + P +L L LKRF+Y + +K++ R
Sbjct: 353 VEVERLEGDNKYHAEG-HDLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYE 411
Query: 256 FPLELRL 262
FPL+L L
Sbjct: 412 FPLQLDL 418
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 70.9 bits (166), Expect = 1e-12
Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 27/250 (10%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNK----RTKETLLTCLADLFYSIATQKKKVG 72
GNTC+ SVLQ P + + + N K ++ L D +A + G
Sbjct: 169 GNTCFIASVLQCFTHTVPLIDSLRSFMYGNPCNCGNEKFCVMQALRD-HIELALRSSGYG 227
Query: 73 SIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGEN 132
I +F L +F Q+DAHEFL ++ + L +NQ
Sbjct: 228 -INIDRFRDNLTYFSSDFMINHQEDAHEFLQSFLDKLERCCLDPKNQL------------ 274
Query: 133 VTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCL 192
GSV + + V +F G L S C NC +VS+ E +++ ++ L
Sbjct: 275 ----GSVS-SQDLNIVDNVFGGGLMSTLCCCNCNSVSNTFEPSLGWSLEIEDVNTLWKAL 329
Query: 193 KCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSH 252
+ F+ E L +++ CDNC +K++R KLP + HLKRF K+
Sbjct: 330 ESFTCVEKL--EDQLTCDNCKEKVTKEKQLRFDKLPPVATFHLKRF--TNDGVTMEKIFD 385
Query: 253 RVVFPLELRL 262
+ FPLEL L
Sbjct: 386 HIEFPLELDL 395
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 319 YDLVAVVVHCGSGPNRGHYISIVKS-HGFWLLFDDDMVDKIDASAI 363
Y L A V H G GHY S V+S W FDD V +I +
Sbjct: 411 YHLYAFVEHIGIRATFGHYSSYVRSAPETWHNFDDSKVTRISEERV 456
>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
(UBP7) similar to GI:11993467
Length = 532
Score = 60.1 bits (139), Expect = 3e-09
Identities = 80/364 (21%), Positives = 138/364 (37%), Gaps = 59/364 (16%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYK-AKNK---RTKETLLTCLADLFYSIATQKKKVG 72
GNTCY NS +Q L + ++ Y+ A+ K +T L +LF + K V
Sbjct: 165 GNTCYMNSTMQCLISVPELKSELSNYQSARTKDVDQTSHMLTVATRELFSEL---DKSVK 221
Query: 73 SIAPKKFIARLRKEKEEF-----DNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKN 127
++AP F L+K+ +F N+MQQDA E ++ +++ +LK+
Sbjct: 222 AVAPMPFWMVLQKKYPQFAQLHNGNHMQQDAEECWTQMLYTLSQ---------SLKLPSP 272
Query: 128 NSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTS 187
+ +P V +F L + C SS+ E F L+ + +
Sbjct: 273 SE--------------DPDAVKALFGLNLLNRLHCQESSEESSETESVFSLKCHISHEVN 318
Query: 188 ITH-CLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNR 246
H LK L + + + K + LP L + RF + + N+
Sbjct: 319 HLHEGLK-----HGLKGELEKTSPSLGRTAVYVKESLIDSLPRYLTVQFVRFFWKRESNQ 373
Query: 247 HIKVSHRVVFPLELRLFN---------------TKRDRSSEXXXXXXXXXXXXXXXXXXV 291
K+ +V +PLEL +++ RD + +
Sbjct: 374 KAKILRKVDYPLELDIYDLCSEDLRKKLEAPRQKLRDIEGQKLGLQASAKSSSKGDDVKM 433
Query: 292 ITVDVTVKPKKEKKNRKSDDAVNPDR--LYDLVAVVVHCGSGPNRGHYISIVKSH-GFWL 348
+ + E + +P +YDLV+V+ H G + GHY++ VK G W+
Sbjct: 434 TDAEGSSNQSGESSTGDQQEGASPHMTGIYDLVSVLTHKGRSADSGHYVAWVKQESGKWV 493
Query: 349 LFDD 352
+DD
Sbjct: 494 QYDD 497
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 57.6 bits (133), Expect = 1e-08
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV-GSIA 75
GNTC+ NSV+Q L RE L+ ++ L++ L +LF ++ I
Sbjct: 208 GNTCFFNSVMQNLLSLDQLREHFLK---EDLSVSGPLVSSLKELFAESNSEASVFRNEIN 264
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTC 135
P+ + + +F Y Q D+HE L L++ ++ E + K+ ++S ++ T
Sbjct: 265 PRDLFFSVCSQAPQFRGYQQHDSHELLRCLLDGLS----IEESSLRKKLGVSDSNDSSTY 320
Query: 136 NGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDV 182
+PT + +F G ++S CL C S E F DL + V
Sbjct: 321 Q-------KPTLIDSVFGGEISSTVSCLECGHFSKVYEPFMDLSLPV 360
Score = 33.9 bits (74), Expect = 0.19
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 187 SITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKK 226
S+ CL F+ E L DN + C+NCS + Q R+R K+
Sbjct: 800 SVDRCLAQFTKHEILSEDNAWHCENCSKNLKLQ-RLREKR 838
Score = 30.7 bits (66), Expect = 1.8
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 216 QEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVFPLELRLFNTKRDRSSE 272
++A+K++ + K P +L +HLKRF + R K+S V F + L R SE
Sbjct: 952 RDARKKVLINKAPPVLTIHLKRFS-QDARGRVSKLSGHVDFQEFIDLSKYMDTRCSE 1007
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 54.4 bits (125), Expect = 1e-07
Identities = 81/373 (21%), Positives = 136/373 (36%), Gaps = 70/373 (18%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNK-----RTKETLLTCLADLFYSIATQKKKV 71
GNTCY NS +Q L + + Y + +T L +LF + + V
Sbjct: 110 GNTCYMNSTVQCLKSVPELKSALSNYSLAARSNDVDQTSHMLTVATRELFGEL---DRSV 166
Query: 72 GSIAPKKFIARLRKEKEEFDN-----YMQQDAHEFLNFLINHINEIILAERNQSTLKVQK 126
+++P +F LRK+ +F +MQQDA E L+ +++ +LK
Sbjct: 167 NAVSPSQFWMVLRKKYPQFSQLQNGMHMQQDAEECWTQLLYTLSQ---------SLKAPT 217
Query: 127 NNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNT 186
++ G + V +F L S C SS+ E + L+ +
Sbjct: 218 SSEGADA--------------VKALFGVNLQSRLHCQESGEESSETESVYSLKCHISHEV 263
Query: 187 SITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQ----KRMRVKKLPLILALHLKRFKYME 242
+ H E L + K + + S K + LP L + RF +
Sbjct: 264 NHLH--------EGLKHGLKGELEKTSPALGRTALYVKESLIDSLPRYLTVQFVRFFWKR 315
Query: 243 QFNRHIKVSHRVVFPLELRLFN-------------TKRDRSSEXXXXXXXXXXXXXXXXX 289
+ N+ K+ +V +PL L +F+ ++ R E
Sbjct: 316 ESNQKAKILRKVDYPLVLDIFDLCSEDLRKKLEAPRQKLREEEGKKLGLQTSAKSGSKDS 375
Query: 290 XVITVDVTVKPK--------KEKKNRKSDDAVNPDRLYDLVAVVVHCGSGPNRGHYISIV 341
V D ++ S+ + +YDLVAV+ H G + GHY++ V
Sbjct: 376 DVKMTDAEASANGSGESSTVNPQEGTSSEKETHMTGIYDLVAVLTHKGRSADSGHYVAWV 435
Query: 342 KSH-GFWLLFDDD 353
K G W+ +DDD
Sbjct: 436 KQESGKWIQYDDD 448
>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 54.0 bits (124), Expect = 2e-07
Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 38/280 (13%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKN--KRTKETLLTC---LADLFYSIATQKKKV 71
GN C+ N+ LQAL C PF + + + + ++ K TL +++L ++ +
Sbjct: 203 GNLCFLNATLQALLSCSPFVQLLQKIQLQDIPKADSPTLAAFSEFISELDVPSSSSIRNN 262
Query: 72 GSIA-------PKKFIARLRKEKEEFDNYM-----QQDAHEFLNFLINHINEIILAERNQ 119
++ P F LR + N M Q+DA EFL+F+++ +++ +L + Q
Sbjct: 263 VTVVEAGRPFRPAMFEGVLRNFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQ 322
Query: 120 S--------TLKVQKNNSGENVTC----NGSVPHNTE---PTWVHEIFQGTLTSETRCLN 164
S ++ N+ G+ N S T+ P+ + EIF G L S +
Sbjct: 323 SPKVTASKSSVISSANDDGDEWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKG 382
Query: 165 CETVSSKDEHFFDLQVDVGQN--TSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRM 222
+ S+ + + L +D+ + I L FS E L + + A K +
Sbjct: 383 TKA-SATVQPYLLLHLDIHPDGVQGIEDALHLFSAQEDL-EGYRASVTGKTGVVSASKSI 440
Query: 223 RVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVFPLELRL 262
+++KL I+ LHL RF Y Q + K+ V FPLEL L
Sbjct: 441 KIQKLSKIMILHLMRFSYGSQGS--TKLRKGVKFPLELNL 478
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 314 NPDRLYDLVAVVVHCGSGPNRGHYISIV-KSHGFWLLFDDDMVDKIDASAI 363
N Y+LVA + H G P++GHY + + +G WL FDD V I +
Sbjct: 488 NESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLV 538
>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 54.0 bits (124), Expect = 2e-07
Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 38/280 (13%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKN--KRTKETLLTC---LADLFYSIATQKKKV 71
GN C+ N+ LQAL C PF + + + + ++ K TL +++L ++ +
Sbjct: 203 GNLCFLNATLQALLSCSPFVQLLQKIQLQDIPKADSPTLAAFSEFISELDVPSSSSIRNN 262
Query: 72 GSIA-------PKKFIARLRKEKEEFDNYM-----QQDAHEFLNFLINHINEIILAERNQ 119
++ P F LR + N M Q+DA EFL+F+++ +++ +L + Q
Sbjct: 263 VTVVEAGRPFRPAMFEGVLRNFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQ 322
Query: 120 S--------TLKVQKNNSGENVTC----NGSVPHNTE---PTWVHEIFQGTLTSETRCLN 164
S ++ N+ G+ N S T+ P+ + EIF G L S +
Sbjct: 323 SPKVTASKSSVISSANDDGDEWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKG 382
Query: 165 CETVSSKDEHFFDLQVDVGQN--TSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRM 222
+ S+ + + L +D+ + I L FS E L + + A K +
Sbjct: 383 TKA-SATVQPYLLLHLDIHPDGVQGIEDALHLFSAQEDL-EGYRASVTGKTGVVSASKSI 440
Query: 223 RVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVFPLELRL 262
+++KL I+ LHL RF Y Q + K+ V FPLEL L
Sbjct: 441 KIQKLSKIMILHLMRFSYGSQGS--TKLRKGVKFPLELNL 478
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 314 NPDRLYDLVAVVVHCGSGPNRGHYISIV-KSHGFWLLFDDDMVDKIDASAI 363
N Y+LVA + H G P++GHY + + +G WL FDD V I +
Sbjct: 488 NESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLV 538
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 52.8 bits (121), Expect = 4e-07
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 184 QNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQ 243
++ S+ CL+ F E L D+ + C C +++A K++ + +LP IL +HLKRF Y +
Sbjct: 471 ESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSY-SR 529
Query: 244 FNRHIKVSHRVVFPLE 259
F ++ K+ V FPL+
Sbjct: 530 FMKN-KLEAYVDFPLD 544
Score = 42.3 bits (95), Expect = 5e-04
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVL-EYKAKNKRT-----KETLLTCLADLFYSIATQKKK 70
GNTC+ NS LQ L + L EY + K + DL S+
Sbjct: 36 GNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPG-- 93
Query: 71 VGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSG 130
++AP+ F A+L + +F + Q D+ E L FL++ ++E + +N+ ++ + +
Sbjct: 94 ASTVAPRTFKAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGR 153
Query: 131 ENVTCNGSVPHN---TEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQV 180
+ N + + ++ QG S C C+ VS + F L +
Sbjct: 154 PDAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSL 206
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 52.8 bits (121), Expect = 4e-07
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 184 QNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQ 243
++ S+ CL+ F E L D+ + C C +++A K++ + +LP IL +HLKRF Y +
Sbjct: 471 ESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSY-SR 529
Query: 244 FNRHIKVSHRVVFPLE 259
F ++ K+ V FPL+
Sbjct: 530 FMKN-KLEAYVDFPLD 544
Score = 42.3 bits (95), Expect = 5e-04
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVL-EYKAKNKRT-----KETLLTCLADLFYSIATQKKK 70
GNTC+ NS LQ L + L EY + K + DL S+
Sbjct: 36 GNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPG-- 93
Query: 71 VGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSG 130
++AP+ F A+L + +F + Q D+ E L FL++ ++E + +N+ ++ + +
Sbjct: 94 ASTVAPRTFKAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGR 153
Query: 131 ENVTCNGSVPHN---TEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQV 180
+ N + + ++ QG S C C+ VS + F L +
Sbjct: 154 PDAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSL 206
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 52.0 bits (119), Expect = 7e-07
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 184 QNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQ 243
+ S+ CL+ F E L D+ + C C +++A K++ + KLP IL HLKRF Y
Sbjct: 731 EGISLFSCLEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRY 790
Query: 244 FNRHI 248
F I
Sbjct: 791 FKNKI 795
Score = 50.4 bits (115), Expect = 2e-06
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 7/171 (4%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLE-YKAK-NKRTKETLLTCLADLFYSIATQKKKVG-- 72
GNTC+ NS LQ L P E L+ Y++ N + + LA F + + G
Sbjct: 307 GNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGMRGELAIAFGELLRKLWSSGQN 366
Query: 73 SIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNS--G 130
++AP+ F +L + +F Y Q D+ E L FL++ ++E + + + ++ + ++
Sbjct: 367 TVAPRAFKTKLARFAPQFSGYNQHDSQEMLAFLLDGLHEDLNKVKRKPYIEAKDSDGRPD 426
Query: 131 ENVTCNGSVPHNT-EPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQV 180
+ V H + + ++FQG S C +C +S + F L +
Sbjct: 427 DEVAEEKWKYHKARNDSVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLSL 477
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 50.8 bits (116), Expect = 2e-06
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 184 QNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQ 243
++ S+ CL+ F E L D+ + C +C +++A K++ + KLP IL HLKRF Y
Sbjct: 745 ESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRY 804
Query: 244 FNRHIKVSHRVVFPL 258
K+ V FP+
Sbjct: 805 LKN--KIDTFVNFPV 817
Score = 50.4 bits (115), Expect = 2e-06
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 7/171 (4%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC--LADLFYSIATQKKKVG-- 72
GNTC+ NS LQ L P E L+ + + L C LA F + + G
Sbjct: 309 GNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRN 368
Query: 73 SIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNS--G 130
S+AP+ F +L + +F Y Q D+ E L FL++ ++E + + + ++++ ++S
Sbjct: 369 SVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPD 428
Query: 131 ENVTCNGSVPHNT-EPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQV 180
+ V H + + ++ QG S C C +S + F L V
Sbjct: 429 DEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPACGKISITFDPFMYLSV 479
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 50.8 bits (116), Expect = 2e-06
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 184 QNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQ 243
++ S+ CL+ F E L D+ + C +C +++A K++ + KLP IL HLKRF Y
Sbjct: 745 ESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRY 804
Query: 244 FNRHIKVSHRVVFPL 258
K+ V FP+
Sbjct: 805 LKN--KIDTFVNFPV 817
Score = 50.4 bits (115), Expect = 2e-06
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 7/171 (4%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC--LADLFYSIATQKKKVG-- 72
GNTC+ NS LQ L P E L+ + + L C LA F + + G
Sbjct: 309 GNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRN 368
Query: 73 SIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNS--G 130
S+AP+ F +L + +F Y Q D+ E L FL++ ++E + + + ++++ ++S
Sbjct: 369 SVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPD 428
Query: 131 ENVTCNGSVPHNT-EPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQV 180
+ V H + + ++ QG S C C +S + F L V
Sbjct: 429 DEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPACGKISITFDPFMYLSV 479
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 50.8 bits (116), Expect = 2e-06
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 184 QNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQ 243
++ S+ CL+ F E L D+ + C +C +++A K++ + KLP IL HLKRF Y
Sbjct: 746 ESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRY 805
Query: 244 FNRHIKVSHRVVFPL 258
K+ V FP+
Sbjct: 806 LKN--KIDTFVNFPV 818
Score = 48.8 bits (111), Expect = 6e-06
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGS--- 73
GNTC+ NS LQ L P E L+ + + L C +L + KK+ S
Sbjct: 310 GNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMC-GELAIAFGDLLKKLWSSGR 368
Query: 74 --IAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNS 129
+AP+ F +L + +F Y Q D+ E L FL++ ++E + + + ++++ ++S
Sbjct: 369 NAVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDS 426
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 48.8 bits (111), Expect = 6e-06
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 187 SITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNR 246
S+ CL+ F E L D + C C+ ++A K++ + +LP +L +HLKRF Y +
Sbjct: 769 SLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRSM-K 827
Query: 247 HIKVSHRVVFPL 258
H K+ V FP+
Sbjct: 828 H-KLETFVNFPI 838
Score = 46.0 bits (104), Expect = 4e-05
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 7/191 (3%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLE--YKAKNKRTKETLLTCLADLFYSIATQKKKVGS- 73
GNTC+ NS +Q L F E ++ N + ++ LA F + + G
Sbjct: 323 GNTCFMNSAIQCLVHTPEFASYFQEDYHQEINWQNPLGMVGELALAFGDLLRKLWAPGRT 382
Query: 74 -IAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQ--KNNSG 130
IAP+ F A+L + +F Y Q D+ E L FL++ ++E + +++ + +
Sbjct: 383 PIAPRPFKAKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPD 442
Query: 131 ENVTCNGSVPH-NTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSIT 189
E V H + + ++ QG S C C VS + F L + + NT+
Sbjct: 443 EEVADEFWKNHIARNDSIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPLQFNTTRA 502
Query: 190 HCLKCFSDTET 200
+ FS +T
Sbjct: 503 ITVTVFSCDKT 513
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 48.8 bits (111), Expect = 6e-06
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 17/166 (10%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIAP 76
GNTC+ NS++Q L R+ L K L + L LF + I P
Sbjct: 237 GNTCFFNSIMQNLLSLDRLRDHFL--KENGSGVGGPLASSLRKLFTETKPEAGLKSVINP 294
Query: 77 KKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTCN 136
+ F + +F Y Q D+HE L L++ ++ +S L+ +K +N
Sbjct: 295 RAFFGSFCSKAPQFRGYDQHDSHELLRCLLDSLS------TEESALR-KKRGVSDN---- 343
Query: 137 GSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDV 182
T + +F G +S C+ C S E F DL + V
Sbjct: 344 ----DEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSLPV 385
Score = 34.3 bits (75), Expect = 0.14
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 187 SITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKK 226
S+ CL F+ E L +DN + C+NCS + Q R+R K+
Sbjct: 710 SVERCLGHFTKHEILSDDNAWNCENCSKNLKLQ-RLREKR 748
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 216 QEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVFP--LELRLFNTKR 267
++A K++ + K P +L +HLKRF + R K++ V F ++LR + R
Sbjct: 830 RDATKKVLINKAPPVLTIHLKRFS-QDLRGRLSKLNGHVAFKEVIDLRQYMDSR 882
>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 361
Score = 46.8 bits (106), Expect = 2e-05
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 25/218 (11%)
Query: 17 GNTCYSNSVLQALYFCRPFR---EKVLE----YKAKNKRTKETLLTCLADLFYSIATQKK 69
GN C+ N +LQAL C+ FR + VLE A + + L L+ L + T
Sbjct: 80 GNNCFLNVILQALASCKDFRSFLQWVLEDARGSLAGEQEEQLPLTFALSALLQELGTVGS 139
Query: 70 KVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHI-NEIILAER-----NQSTLK 123
+ P+K + L + F+ QQDA E L LI+ + EI++ R N S +
Sbjct: 140 RRSVSNPRKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYRPSQSSNLSDIL 199
Query: 124 VQKN--NSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDL--- 178
+N + +G + + F G L S C C + S + FF
Sbjct: 200 FSRNLRMLAPSEGLHGLMELKRWHKHLRGPFDGILGSTLMCRTCSSQISLEFQFFHTLPL 259
Query: 179 -------QVDVGQNTSITHCLKCFSDTETLCNDNKFKC 209
++ ++ HCLK F +TE + N ++C
Sbjct: 260 SPLLHHGGYNIMSGCTLEHCLKKFLNTEKVENYFCYRC 297
>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 494
Score = 46.8 bits (106), Expect = 2e-05
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 25/218 (11%)
Query: 17 GNTCYSNSVLQALYFCRPFR---EKVLE----YKAKNKRTKETLLTCLADLFYSIATQKK 69
GN C+ N +LQAL C+ FR + VLE A + + L L+ L + T
Sbjct: 80 GNNCFLNVILQALASCKDFRSFLQWVLEDARGSLAGEQEEQLPLTFALSALLQELGTVGS 139
Query: 70 KVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHI-NEIILAER-----NQSTLK 123
+ P+K + L + F+ QQDA E L LI+ + EI++ R N S +
Sbjct: 140 RRSVSNPRKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYRPSQSSNLSDIL 199
Query: 124 VQKN--NSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDL--- 178
+N + +G + + F G L S C C + S + FF
Sbjct: 200 FSRNLRMLAPSEGLHGLMELKRWHKHLRGPFDGILGSTLMCRTCSSQISLEFQFFHTLPL 259
Query: 179 -------QVDVGQNTSITHCLKCFSDTETLCNDNKFKC 209
++ ++ HCLK F +TE + N ++C
Sbjct: 260 SPLLHHGGYNIMSGCTLEHCLKKFLNTEKVENYFCYRC 297
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 319 YDLVAVVVHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIDASAIEDFYGLTSDIQKSSE 378
Y L +V H G+ + GHY++ + G W++F+DD V G+++D K +
Sbjct: 741 YKLFGIVSHMGTSVHCGHYVAHILKEGRWVIFNDDKV------------GISTDPPK--D 786
Query: 379 TGYILFYQSRD 389
GY+ F+Q D
Sbjct: 787 MGYVYFFQRLD 797
>At4g22410.1 68417.m03238 ubiquitin carboxyl-terminal hydrolase
family protein similar to U4/U6.U5 tri-snRNP-associated
65 kDa protein [Homo sapiens] GI:13926071; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 340
Score = 37.5 bits (83), Expect = 0.015
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 19 TCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKK 78
T + N +Q+L P R + K L+ C +L I + G ++P +
Sbjct: 124 TEFVNVTIQSLMRVTPLRN-FFHIPENYQHCKSPLVHCFGELTRKIWHARNFKGQVSPHE 182
Query: 79 FI-ARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE 131
F+ A ++ K+ F Q D EF+++L+N ++ + ++ S++ + K GE
Sbjct: 183 FLQAVMKASKKRFRIGQQSDPVEFMSWLLNTLHMDLRTSKDASSI-IHKCFQGE 235
>At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase
family protein contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 367
Score = 36.7 bits (81), Expect = 0.027
Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 17/215 (7%)
Query: 7 FGLNFQHRMFGNTCYSNSVLQALYFCRPFREKVLEYKAK-NKRTKETLLTC-LADLF--Y 62
FG Q+ + C+ N ++Q+L+ FR + L + + + + C L ++F
Sbjct: 33 FGTGLQNEVGEYNCFLNVIIQSLWNLELFRAEFLRSSTREHHHVGDPCVVCSLYEIFTAL 92
Query: 63 SIATQKKKVGSIAPKKF---IARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQ 119
S A+ +K+ +AP ++ L + F DA E L + + ++ ++
Sbjct: 93 SAASSEKQNEPVAPSSLRIALSNLYPDSSFFQEAQMNDASEVLAVIFDCLHRSF--AQSS 150
Query: 120 STLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNC--ETVSSKDEHFF- 176
S V ++S C GS H +F + + C +C E+ K FF
Sbjct: 151 SVSDVDSSDS----NCTGSWDCANRTCIAHSLFGMDIFEQLNCYSCGLESRHLKYTSFFH 206
Query: 177 DLQVDVGQNTSITHCLKCFSDTETLCNDN-KFKCD 210
++ + +T F + L N + CD
Sbjct: 207 NINASALRTMKVTCAENSFDELLNLVEMNHQLACD 241
>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1568
Score = 31.5 bits (68), Expect = 1.0
Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 17/215 (7%)
Query: 7 FGLNFQHRMFGNTCYSNSVLQALYFCRPFREKVLEYKA-KNKRTKETLLTC-LADLFYSI 64
FG Q+ + C+ N ++Q+L+ FR + L ++ + + C L +F ++
Sbjct: 1233 FGTGLQNEVGEYNCFLNVIIQSLWNLGMFRAEFLRSSTLEHHHFGDPCVVCSLYAIFTAL 1292
Query: 65 ATQKKKVGS--IAPKKF---IARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQ 119
+T + +AP ++ L + F DA E L + + ++ +
Sbjct: 1293 STASSETRKEPVAPSSLRIALSNLYPDSSFFQEAQMNDASEVLAVIFDCLHRSFAQSSSV 1352
Query: 120 STLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNC--ETVSSKDEHFF- 176
S + ++NS GS H +F ++ + C +C E+ K FF
Sbjct: 1353 SDTESAESNS------TGSWDCANRSCIAHSLFGMDVSEQLNCYSCGLESRHLKYTSFFH 1406
Query: 177 DLQVDVGQNTSITHCLKCFSDTETLCNDN-KFKCD 210
++ + +T F + L N + CD
Sbjct: 1407 NINASALRTMKVTCAENSFDELLNLVEMNHQLACD 1441
>At4g22350.1 68417.m03231 ubiquitin carboxyl-terminal hydrolase
family protein similar to U4/U6.U5 tri-snRNP-associated
65 kDa protein [Homo sapiens] GI:13926071; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 510
Score = 31.1 bits (67), Expect = 1.3
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 19 TCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKK 78
T + N +Q+L P R L + K L +L I + G ++P +
Sbjct: 208 TEFVNVTIQSLMRVTPLRNFFL-IPENYQHCKSPLGHRFGELTRKIWHARNFKGQVSPHE 266
Query: 79 FI-ARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE 131
F+ A ++ K+ F Q D EF+++L+N ++ + ++ S++ + K GE
Sbjct: 267 FLQAVMKASKKRFRIGQQSDPVEFMSWLLNTLHMDLRTSKDASSI-IHKCFQGE 319
>At5g50840.1 68418.m06298 expressed protein
Length = 404
Score = 30.7 bits (66), Expect = 1.8
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 40 LEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAH 99
LE++ K K + L++ +T K++ S+ PKK + + K + M +
Sbjct: 81 LEFEQKEKEASPPISQTLSEGSTQNSTLSKEMDSLKPKK--QEVVESKRKGSKNMFKSEK 138
Query: 100 EFLNFLINHINEIILAERNQS 120
EFL F++ + + +L+ER+ +
Sbjct: 139 EFLEFMLKY--QQVLSERDSA 157
>At5g50840.2 68418.m06299 expressed protein
Length = 405
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 40 LEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAH 99
LE++ K K + L++ +T K++ S+ PKK + + K + M +
Sbjct: 81 LEFEQKEKEASPPISQTLSEGSTQNSTLSKEMDSLKPKK-QQEVVESKRKGSKNMFKSEK 139
Query: 100 EFLNFLINHINEIILAERNQS 120
EFL F++ + + +L+ER+ +
Sbjct: 140 EFLEFMLKY--QQVLSERDSA 158
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 162 CLNCETVSSK-----DEHFFDLQVDVGQNTSITHCLKCFSDTE-TLCNDNKFKCDNC 212
C+ C T+ K D+HF L D G ++ C C + T+ ++C + CD C
Sbjct: 416 CIRCATLPKKVKHRCDDHFLSLCHDAGNSSGDLWCDICETKTDPSVC---YYTCDKC 469
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 72 GSIAPKKFI-ARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSG 130
G ++P +F+ A ++ K+ F Q D EF+++L+N ++ + ++ S++ + K G
Sbjct: 713 GMVSPHEFLQAVMKASKKRFRIGQQSDPVEFMSWLLNTLHMDLRTSKDASSI-IHKCFQG 771
Query: 131 E 131
E
Sbjct: 772 E 772
>At2g20510.1 68415.m02395 mitochondrial import inner membrane
translocase subunit TIM44, putative contains similarity
to Swiss-Prot:O35857 import inner membrane translocase
subunit TIM44, mitochondrial precursor [Mus musculus];
contains Pfam domian PF04280: Mitochondrial import inner
membrane, translocase subunit TIM44
Length = 472
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/97 (21%), Positives = 38/97 (39%)
Query: 2 SICQDFGLNFQHRMFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLF 61
S+ +F N + N + +V + F+ + K + K+T E L ++
Sbjct: 46 SVFTEFSKNIRGEAHSNPEFERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQADGVW 105
Query: 62 YSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQDA 98
+ KKV S K A + KE F +++A
Sbjct: 106 TEAESAAKKVSSSVKDKLSAASEEVKESFKLGKEENA 142
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.135 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,124,674
Number of Sequences: 28952
Number of extensions: 377256
Number of successful extensions: 1061
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 87
length of query: 392
length of database: 12,070,560
effective HSP length: 82
effective length of query: 310
effective length of database: 9,696,496
effective search space: 3005913760
effective search space used: 3005913760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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