Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001054-TA|BGIBMGA001054-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
(392 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8927| Best HMM Match : UCH (HMM E-Value=0) 223 3e-58
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 4e-17
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 5e-12
SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06) 64 2e-10
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 62 8e-10
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 59 7e-09
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 7e-09
SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20) 54 2e-07
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 52 8e-07
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 8e-07
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 4e-06
SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-05
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-05
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 47 3e-05
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06) 46 4e-05
SB_52467| Best HMM Match : UCH (HMM E-Value=2.6e-23) 44 2e-04
SB_19087| Best HMM Match : Sof1 (HMM E-Value=0.63) 37 0.024
SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.056
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 36 0.075
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13) 35 0.099
SB_991| Best HMM Match : UCH (HMM E-Value=1.2) 35 0.099
SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022) 32 0.70
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 32 0.92
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057) 32 0.92
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25) 31 1.2
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0) 30 2.8
SB_20219| Best HMM Match : UCH (HMM E-Value=2.7e-06) 30 3.7
SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18) 29 4.9
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 29 4.9
SB_22260| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2) 29 4.9
SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_59426| Best HMM Match : ERCC4 (HMM E-Value=0.027) 29 6.5
SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3) 29 8.6
>SB_8927| Best HMM Match : UCH (HMM E-Value=0)
Length = 316
Score = 223 bits (544), Expect = 3e-58
Identities = 136/272 (50%), Positives = 166/272 (61%), Gaps = 21/272 (7%)
Query: 16 FGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIA 75
FGNTCY NSVLQAL+FCRPFR+KVL YK +KR KETLLTCLADLF +IA+QKKKVG IA
Sbjct: 28 FGNTCYCNSVLQALFFCRPFRDKVLSYKPPSKR-KETLLTCLADLFNNIASQKKKVGVIA 86
Query: 76 PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHI------NEIILAERNQSTLKVQ---- 125
PKKF+ARLRKE E FDNYMQQDAHEFLN+L+N I NE + N +Q
Sbjct: 87 PKKFVARLRKENELFDNYMQQDAHEFLNYLLNTIADLLQGNEFLNYLSNMIAHLLQGEKV 146
Query: 126 KNNSGENVTCNGSVPHN---TEPTWVHEIFQGTLTSETRCL--NCETVSS--KDEHFFDL 178
K E + +GS+ + + + I C+ N T +S + E +
Sbjct: 147 KEKEKEKHSSSGSISSKGSLSSASTIGSITPAIPNGTANCIINNPTTTNSNMRTETTWVH 206
Query: 179 QVDVGQNTSITHCLKC--FSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLK 236
++ G T+ T CL C S + D + +S RMRVKKLP +LALHLK
Sbjct: 207 EMFEGTLTNETRCLCCESVSSKDESFLDLSVDVEQNTSITHCL-RMRVKKLPKLLALHLK 265
Query: 237 RFKYMEQFNRHIKVSHRVVFPLELRLFNTKRD 268
RFKYMEQ R+ K+S+RVVFP ELRLFNT D
Sbjct: 266 RFKYMEQLQRYTKLSYRVVFPFELRLFNTSDD 297
Score = 42.3 bits (95), Expect = 6e-04
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 309 SDDAVNPDRLYDLVAVVVHCG 329
SDDAVN D+LYDLV+VV+HCG
Sbjct: 295 SDDAVNNDQLYDLVSVVIHCG 315
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 86.2 bits (204), Expect = 4e-17
Identities = 99/401 (24%), Positives = 158/401 (39%), Gaps = 63/401 (15%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIAP 76
G TCY NSVLQ LY RE VL ++ K+++ + LF + K + AP
Sbjct: 11 GATCYMNSVLQQLYMQPGIREYVLGLD-EDYVEKDSVFYQIQSLFGHLMDSKLQY--FAP 67
Query: 77 KKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTCN 136
++F + + + QQDA EF L + ++E + +++ K
Sbjct: 68 EQFWKCFKLWGQPVNVREQQDAFEFFCNLTDQLDEHLKSKKQDQLFK------------- 114
Query: 137 GSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFS 196
+ F G + C C ++E F+ L V V +N ++ L+ F
Sbjct: 115 -------------KTFCGMFADQKICKECNHRYEREEAFYSLPVTV-KNHNLQDSLEQFV 160
Query: 197 DTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVF 256
+ E L DN + C+ C+ + KRM +K LP +L + LKRF Y + R +K F
Sbjct: 161 NGEILEGDNAYFCEKCNKRRTTVKRMCIKTLPPVLVIQLKRFGYDWEAGRALKFDDYFEF 220
Query: 257 PLELRLFNTKRDRSSEXXXXXXXXXXXXXXXXXXVITVDVTVKPKKEKKNRKSDDAVNPD 316
P L + D + + + S V P
Sbjct: 221 PWTLDMEPYTSDGVARREQANASPDMDSDNGSV------TSSSQSLNSIHSNSSVTVTPS 274
Query: 317 RL-YDLVAVVVHCGSGPNRGHYISIVK----------SHGFWLLFDDDMVDK-------I 358
+ YDLV +VH G N GHY S +K ++G W F+D +V++ +
Sbjct: 275 EITYDLVGAIVHSGQA-NAGHYYSYIKDRRSGAEGAETYGKWFKFNDTIVEEFEMTEESV 333
Query: 359 DASAIEDFYGLT--SDIQKSSET------GYILFYQSRDAS 391
+A Y T + ET Y+LFY++ DA+
Sbjct: 334 EAECFGGTYKATVYDTVNSYPETRHRYWSAYMLFYEASDAN 374
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 69.3 bits (162), Expect = 5e-12
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 26/198 (13%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLT--CL-ADLFYSIAT--QKKKV 71
GNTC+ NSV+Q L + P ++ Y A + T+E + C+ +L I ++
Sbjct: 122 GNTCFLNSVVQVLTYTAP----LVNYLATQEHTRECQMVGFCMMCELQRHILRTFNHQQN 177
Query: 72 GSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE 131
SI P I RLR + Q+DAHEFL ++I+ + + LA + + + K
Sbjct: 178 ESIKPLCIIQRLRSIAKHLRFGHQEDAHEFLRYVIDGMQKSCLAGQPEKMDRYSK----- 232
Query: 132 NVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHC 191
E T VH IF G S+ +CL C S+ + ++ VD+ + S+
Sbjct: 233 ------------ETTIVHGIFGGYYRSQVQCLKCHNTSNTFDPLMEIMVDIKHSPSVVRA 280
Query: 192 LKCFSDTETLCNDNKFKC 209
++ E L DN ++C
Sbjct: 281 IQRMCKAELLDGDNLYQC 298
Score = 34.3 bits (75), Expect = 0.17
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 315 PDRLYDLVAVVVHCGSGPNRGHYISIVK-SHGFWLLFDDDMVDKIDASAI 363
P Y L V+VH G N GHY V+ S+ W +D MV ++ + +
Sbjct: 333 PPLKYKLYGVLVHSGYSCNSGHYYCYVRGSNDCWYNMNDSMVRQVGLNTV 382
>SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06)
Length = 757
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 133 VTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCL 192
+TC+GS + + IF S RC C T S + F++L +++ ++S+ C+
Sbjct: 86 LTCSGS----SICAHLQVIFAQLQYSIRRCDKCGTESKRPSRFYELDLNIQGHSSLNQCI 141
Query: 193 KCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKY 240
K F E L DN++ C C S Q+A++ + +K LP +L L L RF +
Sbjct: 142 KEFLKEEKLDCDNQYFCTQCQSKQDARRYIELKHLPPVLNLQLLRFVF 189
Score = 33.9 bits (74), Expect = 0.23
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 318 LYDLVAVVVHCGSGPNRGHYISIVKSH--GFWLLFDDDMVDKIDASAIEDFYGLTSDIQK 375
+Y+L AV++H GS GHY++ ++ + W F+D+ +K+ + LT D +
Sbjct: 216 VYELSAVLMHHGSSAYSGHYVAHIRDNKTKSWYKFNDEDTEKMQSK-----LKLTGD-DE 269
Query: 376 SSETG 380
SSE G
Sbjct: 270 SSEPG 274
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 62.1 bits (144), Expect = 8e-10
Identities = 65/267 (24%), Positives = 108/267 (40%), Gaps = 26/267 (9%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIAP 76
G TCY NSV+Q L+ R+ VL + +E L + S +T S
Sbjct: 1262 GATCYMNSVIQQLFMIPELRKGVLAVEGAAAEEEEDPSVELEEKSESESTIDTGYHSEES 1321
Query: 77 KKFI----ARLRKEKEEFDNYMQQDAHEFLNFLINHINEI---------------ILAE- 116
K + R + +E NY Q + + ++ H+++ L E
Sbjct: 1322 SKDLETQGGEARDKAQEQKNY-QVNVLRQIQYIFGHLSQSQLQFHIPKGFWKTFKFLGEP 1380
Query: 117 ---RNQSTLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDE 173
R Q NN +N+ V N EP + ++ G+ + C C S++
Sbjct: 1381 VNLREQHDALEFFNNLLDNLDEGMKVLGN-EPIF-SKVLGGSFADQKICKGCPHRYSREA 1438
Query: 174 HFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILAL 233
F L VD+ + S+ ++ F + L N + C+ C + KRM + KLP ++A+
Sbjct: 1439 PFIALNVDIRNHQSLHDSMEQFVKGDLLEGANAYHCEKCDKKVDTVKRMCISKLPRVMAI 1498
Query: 234 HLKRFKYMEQFNRHIKVSHRVVFPLEL 260
LKRF Y + +K + FP E+
Sbjct: 1499 QLKRFDYDWERECAVKFNDYFEFPREI 1525
>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
Length = 711
Score = 58.8 bits (136), Expect = 7e-09
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 24/115 (20%)
Query: 148 VHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQN--------------------TS 187
V E+FQG L ET+CL CE + E F D+ V V ++ T
Sbjct: 120 VEEMFQGRLVHETKCLTCENAKQRFEDFQDVSVPVHEDQQAIDAKRKLMLSPTPKKDETV 179
Query: 188 ITHCLKC----FSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRF 238
H L+ F+ E L ++NK+ C+NC +Y EA+ LP +L LHLKRF
Sbjct: 180 KKHTLEWAISQFATVEVLKDNNKYFCENCCTYTEARLSTFFDLLPQVLTLHLKRF 234
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 162 CLNCETVSSK---DEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEA 218
C N ETV K +E D + NT++ +CFS + + + + CS +A
Sbjct: 316 CHNQETVQRKGLTNEESLDCSKKLQDNTAVNDESECFSKHQVQSSGYDCRNEQCSENTKA 375
Query: 219 QKRMRVKK 226
+ +VK+
Sbjct: 376 AESYQVKQ 383
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 58.8 bits (136), Expect = 7e-09
Identities = 33/115 (28%), Positives = 52/115 (45%)
Query: 148 VHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKF 207
V E+F G +T+ L+C VS E F+ ++ V ++ L + +TL DN +
Sbjct: 1237 VRELFCGVITNNVVSLDCSHVSKTKEEFYSVRCTVADMKNLYESLDEVTVKDTLDGDNMY 1296
Query: 208 KCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVFPLELRL 262
C C A+KR LP IL + R+ + KV+ FPL+L +
Sbjct: 1297 TCSQCGKKVRAEKRACFTVLPRILCFNTMRYTFNMVTMMKEKVNTHFSFPLQLNM 1351
Score = 39.1 bits (87), Expect = 0.006
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 310 DDAVNPDRLYDLVAVVVHCGSGPNRGHYISIVKSHGF-----WLLFDDDMVDKIDASAI 363
D +P+ Y+L+ VVVH G+ GHY S +++ + W LF+D V D S I
Sbjct: 1367 DAEKDPNYWYNLIGVVVHTGTAEG-GHYYSFIRNRSYPQQDKWFLFNDAEVKPFDPSQI 1424
Score = 28.7 bits (61), Expect = 8.6
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCL-------ADLFYSIATQK- 68
G TCY S +Q L+ R +L AK +R K +L + A +SI K
Sbjct: 1128 GATCYMASCIQQLFLMPQARCSILN--AKVRRLKHGVLARVYPECQGKASEAWSILNAKM 1185
Query: 69 KKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEI 112
+ + P+ F +K+ + Q+D EF LI+ + E+
Sbjct: 1186 SERKAYNPRSFCRTYTMDKQLINTGEQKDMTEFFTDLISKLEEM 1229
>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 58.4 bits (135), Expect = 9e-09
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 149 HEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKFK 208
H++ + S +C + VS++ E F+D+Q++V +I K + +E L DNK+
Sbjct: 347 HDVQELCRVSYIKCTKVDYVSTRLEPFYDIQLNVKGKKNIHDSFKEYCASELLDGDNKYD 406
Query: 209 CDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVF 256
QEA+K + KK P +L L L RF+Y + ++K++ R F
Sbjct: 407 AGE-HGLQEAKKGVMFKKFPPVLHLQLMRFQYDPVADANVKINDRYEF 453
Score = 37.1 bits (82), Expect = 0.024
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSI 64
G TCY NS+LQ LYF R+ V + +N +++ L +FY +
Sbjct: 287 GATCYMNSLLQTLYFTCALRKAVYQMPTENDDLGKSVAFALQRVFYEL 334
>SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20)
Length = 379
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 187 SITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNR 246
++ C++ F++ ETL D+ + C C ++EA K+M + +LP L +HLKRF + R
Sbjct: 255 TLRECVELFTEPETLGEDDAWHCPKCKKHREATKQMSLWRLPDTLIIHLKRFSFKNILFR 314
Query: 247 HIKVSHRVVFPL 258
K++ V FP+
Sbjct: 315 D-KITKLVEFPV 325
Score = 49.2 bits (112), Expect = 6e-06
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 89 EFDNYMQQDAHEFLNFLINHINEII-LAERNQSTLKVQKNNSGENVTCNGSVPHNTE--P 145
+F +MQQDA EF+ FL++ ++E + + T +V+ ++ N + +
Sbjct: 9 QFRGFMQQDAQEFMAFLLDGLHEDLNRVLKKPYTEEVEGAGKPDHEVANEAWRRHRSRND 68
Query: 146 TWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETL 201
+ + ++FQG L S+ C C+T+S K + F +L V + + + + F DT +
Sbjct: 69 SIIVDMFQGQLKSKLTCPVCKTISIKYDPFMNLSVPLPKENKLLKVVVFFKDTSRM 124
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 52.0 bits (119), Expect = 8e-07
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 14 RMFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLF--YSIATQKKKV 71
R GNTCY NSVLQ L+ P + ++ KE L +L +SI +
Sbjct: 699 RNLGNTCYMNSVLQCLFNTAPLAAYFVSGAFRDDINKENPLGTSGELAEQFSILVRATNC 758
Query: 72 G---SIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQ 119
G S++P +F + + K F Y QQD+ EFL +++ ++E + + ++
Sbjct: 759 GRFKSLSPLEFKRLIGRIKTSFAGYDQQDSQEFLALMMDKLHEDVCQDNSK 809
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 52.0 bits (119), Expect = 8e-07
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 187 SITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNR 246
S+ L F + E L N++ C+ C Q+A++ + + P+ L L LKRF Y + +
Sbjct: 715 SLEEMLGYFFEPEMLEGSNQYHCERCQGLQDAERSVVIANAPMFLVLTLKRFSYNVRTHE 774
Query: 247 HIKVSHRVVFPLELRLFN 264
K+ V +P L+L N
Sbjct: 775 RSKILQSVSYPARLQLSN 792
Score = 31.1 bits (67), Expect = 1.6
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 17 GNTCYSNSVLQALY 30
GNTCY NSVLQ+LY
Sbjct: 409 GNTCYMNSVLQSLY 422
Score = 30.7 bits (66), Expect = 2.1
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 73 SIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGEN 132
+ AP KF+ R F QQD EFL ++++ L E ++ V ++ SG
Sbjct: 535 AFAPSKFLHAARPPW--FAPGTQQDCSEFLKYMLDR-----LEEEDKIQAGVNRSMSG-- 585
Query: 133 VTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDL 178
+ + + + F G L C C VS ++E F DL
Sbjct: 586 ----AGLGQDMISNIIEDTFSGRLIVCHSCRRCRHVSCREEAFTDL 627
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 49.6 bits (113), Expect = 4e-06
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 148 VHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKF 207
+ +IF G L S + S+ E FF LQ+D+ + I L + E L F
Sbjct: 488 ISDIFGGCLRSSVHQTGAKE-SANVEPFFCLQLDIQNVSCIEDALNHLTVKEEL---QGF 543
Query: 208 KCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVFPLEL 260
C ++ + +R+ + LP +L LHLKRF Y + N K+ V +PLEL
Sbjct: 544 TCSKTNAQIDVSRRVSFEVLPKVLILHLKRFIYSK--NGSQKLQKHVDYPLEL 594
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 95 QQDAHEFLNFLINHINE--IILAERNQSTLKVQKNNSGENV 133
Q+DA EFL+ L+N I+E I+L++ + K + + S E V
Sbjct: 402 QEDAEEFLSCLLNGIHEEMIVLSKLDPPLPKPESHESSEGV 442
>SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 47.6 bits (108), Expect = 2e-05
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 17 GNTCYSNSVLQAL--------YFCRPFREKVLEYKAKNKR-TKETLLTCLADLFYSIATQ 67
GNTC+ NS LQ L YF +E V E N K + ADL I +
Sbjct: 228 GNTCFMNSGLQCLSNTMTLTKYFLS--KEYVDELNTDNPLGMKGEIAKAYADLLNQIWSG 285
Query: 68 KKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINE 111
+ SIAP++F ++ + +F Y QQD+HE L FL++ ++E
Sbjct: 286 QSS--SIAPRQFKMQVGRFAPQFSGYQQQDSHELLAFLLDGLHE 327
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 47.6 bits (108), Expect = 2e-05
Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 32/202 (15%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIAT-----QKKKV 71
G TCY NSVLQ LY RE+V + + ++ L +FY I + K+
Sbjct: 11 GATCYMNSVLQQLYMQPGIRERVSPDPSPVCWLPDIVVGFLGSVFYQIQSLFGHLMDSKL 70
Query: 72 GSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE 131
AP++F + + + QQDA EF L + ++E + +++ K
Sbjct: 71 QYFAPEQFWKCFKLWGQPVNVREQQDAFEFFCNLTDQLDEHLKSKKQDQLFK-------- 122
Query: 132 NVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHC 191
+ F G + C C ++E F+ L V V +N ++
Sbjct: 123 ------------------KTFCGMFADQKICKECNHRYEREEAFYSLPVTV-KNHNLQDS 163
Query: 192 LKCFSDTETLCNDNKFKCDNCS 213
L+ F + E L DN + C+ C+
Sbjct: 164 LEQFVNGEILEGDNAYFCEKCN 185
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 46.8 bits (106), Expect = 3e-05
Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 191 CLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKV 250
CL+ F D E L ++ + C C++ + A K + V + P L +HLKR+++ Q K+
Sbjct: 1005 CLRTFVDREEL--EDLWPCSMCNAQRTATKSLSVCRFPDTLIVHLKRYRHSNQ-----KI 1057
Query: 251 SHRVVFPLE---LRLF----NTKRDRSSEXXXXXXXXXXXXXXXXXXVITVDVT-----V 298
V +PLE +R F N+ RD S + V+ +
Sbjct: 1058 MAPVDYPLEELDMREFMQSANSPRDSSLTNGEYVYDLIGCICHEGGAPVAQSVSRWWHEM 1117
Query: 299 KPKKEKKNRKSDDAVNPDRLYDLVAVVVHCG---SGPNRGHYISIVKSHG---FWLLFDD 352
+ KN DD + D+ D V G S + GHY + + HG W LFDD
Sbjct: 1118 HQRYTDKNNDDDDG-DHDKTSDNDCVDEKDGLFFSDHDSGHYKAYTR-HGRNADWYLFDD 1175
Query: 353 DMVDKIDASAIEDFYGLTSDIQKSSETGYILFYQSRDAS 391
+V K +F G +++T Y+LFY R S
Sbjct: 1176 HLVSK-------EFPG-----SSTNKTVYLLFYNKRSGS 1202
Score = 29.9 bits (64), Expect = 3.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVL-EYK 43
GNTC+ N+ LQ L+ +PF+ L EY+
Sbjct: 470 GNTCFMNAGLQCLFVIKPFQRFFLSEYE 497
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 46.4 bits (105), Expect = 4e-05
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 18/185 (9%)
Query: 17 GNTCYSNSVLQAL--------YFCRP-FREKVLEYKAKNKR--TKETLLTCLADLFYSIA 65
GNTC+ N+++Q L YF +++ + K + K+ TK + LA L S+
Sbjct: 1955 GNTCFINAIIQCLAHTDLLAEYFVMGGYKQDLKLRKGQIKKFGTKGEVTEKLAVLLKSLW 2014
Query: 66 TQKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQ 125
+ G ++ +F + + K ++ Y Q DA EFL +L++ ++E L + K
Sbjct: 2015 YSEYS-GEVS-SEFKSVVGKHGAQYRGYSQHDAQEFLLWLLDIVHE-DLNRATKRKYKAN 2071
Query: 126 KNNSGENVTCNGSVPHNT----EPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVD 181
K+N G + C + N ++V ++FQ S C C+ S+ + F L +
Sbjct: 2072 KDNLGRSDECIATEALNNHLRCNDSFVLDLFQAQYRSALSCPKCKQKSTTFDPFLCLSLP 2131
Query: 182 VGQNT 186
+ Q +
Sbjct: 2132 IPQRS 2136
Score = 30.3 bits (65), Expect = 2.8
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 304 KKNRKSDDAVNPDRLYDLVAVVVHCGSGPNRGHY----ISIVKSHG-FWLLFDDDMVDKI 358
++ R+S D LYDL AV H G+ + GHY +++ G + I
Sbjct: 2439 RRTRRSSGVAGEDNLYDLYAVCNHLGN-MSGGHYRHTAVTLPMGSGTCTMTLGKKFSTII 2497
Query: 359 DASAIEDFYGLTSDI---QKSSETGYILFYQSRDASC 392
D + T + Q +++ Y+LFY R+ C
Sbjct: 2498 DYHVTLYYVPHTVQVPVNQVTTQAAYLLFYARRNLGC 2534
>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
Length = 781
Score = 46.4 bits (105), Expect = 4e-05
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 8 GLNFQHRMFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQ 67
G + GNTCY N++LQ+L PF + + + N + CL Y +
Sbjct: 601 GSKIRFSNLGNTCYMNAILQSLLGIEPFAQDLANKELHNLVSNS---QCLLKSAYGLLCC 657
Query: 68 KKK-----VGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQS 120
K+ V + +KF ++ + F +Q DAHEFL +++ + + +L +S
Sbjct: 658 KRNKCELDVQRMHLRKFKRQISEAATRFSGNLQHDAHEFLCQVLDQLKDDVLKPLTES 715
Score = 29.9 bits (64), Expect = 3.7
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 206 KFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKY 240
++ C+ C +++A + +LP +L LHLKR+ +
Sbjct: 725 EYTCEECK-HKQATISHKFSRLPRVLILHLKRYNF 758
>SB_52467| Best HMM Match : UCH (HMM E-Value=2.6e-23)
Length = 422
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 188 ITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKY 240
+ C++ F E L ++ + C C +Q+A K+ + LP +L +HLKRF Y
Sbjct: 248 LNDCIQLFLTREKLGANDPWYCPQCKKHQQASKKFDLWCLPEVLVIHLKRFSY 300
>SB_19087| Best HMM Match : Sof1 (HMM E-Value=0.63)
Length = 279
Score = 37.1 bits (82), Expect = 0.024
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 318 LYDLVAVVVHCGSGPNRGHYISIVKS--HGFWLLFDDDMVDKIDASAIEDFY-------- 367
+Y+L ++++H GS + GHY + +KS W F+D V ++ IE +
Sbjct: 4 VYELFSIMIHSGSA-SGGHYYAYIKSFADNQWYCFNDQNVTQVGDDEIERTFGGSEYGPR 62
Query: 368 GLTSDIQKSSETGYILFYQ 386
G S + SS Y+L Y+
Sbjct: 63 GYYSSLYSSSTNAYMLMYR 81
>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 35.9 bits (79), Expect = 0.056
Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 73 SIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHIN-EIILAER 117
S +P+ + + K F Y QQDAHEF+++L++ ++ E++L+++
Sbjct: 799 SHSPEALFSTVWKVVPRFRGYQQQDAHEFMHYLMDRLHTELLLSQK 844
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 35.5 bits (78), Expect = 0.075
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 EFLNFLINHINEII--LAERNQSTLKVQKNNSGENVTCNGSVPH-NTEPTWVHEIFQGTL 156
EFL+FL++ ++E + + ++ LK E V H + + ++FQG L
Sbjct: 448 EFLSFLLDGLHEDLNRVHDKPYVELKDSDGRLDEIVAQEAWDNHIKRNQSIIVDLFQGQL 507
Query: 157 TSETRCLNCETVSSKDEHFFDLQVDVGQNTSI 188
S+ RC+ C VS++ + F L + + + SI
Sbjct: 508 KSQVRCVECGYVSARFDPFTFLSLPLPMDNSI 539
>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
Length = 969
Score = 35.1 bits (77), Expect = 0.099
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 215 YQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVFPLEL 260
Y EA K++ + PL+L LHLKRF+ + R KV+ V FPL L
Sbjct: 800 YTEATKQLLLSHPPLVLTLHLKRFQQVLFGLR--KVAKHVDFPLVL 843
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 187 SITHCLKCFSDTETLCNDNKFKCDNCS 213
S+ CL F ETL NKF C+ C+
Sbjct: 701 SVMSCLSVFCAKETLTGKNKFACEECT 727
>SB_991| Best HMM Match : UCH (HMM E-Value=1.2)
Length = 226
Score = 35.1 bits (77), Expect = 0.099
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 309 SDDAVNPDRL-YDLVAVVVHCGSGPNRGHYISIVK----------SHGFWLLFDDDMVDK 357
S V P + YDLV +VH G N GHY S +K ++G W F+D +V++
Sbjct: 42 SSVTVTPSEITYDLVGAIVHSGQA-NAGHYYSYIKDRRSGAEGAETYGKWFKFNDTIVEE 100
Query: 358 ID 359
+
Sbjct: 101 FE 102
>SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022)
Length = 340
Score = 32.3 bits (70), Expect = 0.70
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 74 IAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINE 111
I P + + +R +F Y QQDA EFL +++ ++E
Sbjct: 148 IVPTQLLRSIRAVNSQFRGYGQQDAQEFLRCIMDQLHE 185
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 31.9 bits (69), Expect = 0.92
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 152 FQGTLTSETRCLNCETVSSKDEHFFD-LQVDV---GQNTSI--THCLKCFSDTETLCNDN 205
F+G +T +C+ C + FD + ++ G+ +I C++ F + ETL +N
Sbjct: 73 FEGNITYAYKCVACNAQERLNSDIFDCITAEIAEKGEGIAIGTKDCVEEFWNEETLGTEN 132
Query: 206 KFKCDNCSSYQEAQKRM 222
K C C+ +K +
Sbjct: 133 KVICHKCNLKTTTEKEV 149
>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
Length = 976
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 80 IARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNN 128
+ RL +EKEEF NY Q++ F H I+ E L++ K N
Sbjct: 377 VERLEREKEEFKNYKQEEVASFKEQTRQHALTIVAME--DRLLRLTKQN 423
>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
Length = 1088
Score = 31.5 bits (68), Expect = 1.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 14 RMFGNTCYSNSVLQALYFCRPFREKVLEYK 43
R GNTCY NSVLQ L F+++ + +
Sbjct: 218 RNLGNTCYMNSVLQVLMTLPEFKQRYADLR 247
>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 790
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 27 QALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKE 86
+AL F +V E A N+ ++ L C A + + K+ + +K ++
Sbjct: 424 EALQTLLLFLNEVAENSAVNQMNEKNLGVCFAPSLFHLCGTKEDPSAPKRQKRTPMIKAS 483
Query: 87 KEEFDNYMQQDAHEFLNFLINHINEIIL 114
KE DN AHE L +I ++++ L
Sbjct: 484 KELTDNLA---AHECLTQMIAQVDKLFL 508
>SB_20219| Best HMM Match : UCH (HMM E-Value=2.7e-06)
Length = 543
Score = 29.9 bits (64), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 17 GNTCYSNSVLQALYFCRPFREKVLE 41
G TCY NS++Q L+ F E +L+
Sbjct: 48 GGTCYLNSLIQTLFLTPEFTENILK 72
>SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)
Length = 457
Score = 29.5 bits (63), Expect = 4.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 19 TCYSNSVLQALYFCRPFREKVLEYKAKN 46
TCY NS+LQ LY FR + ++N
Sbjct: 215 TCYLNSLLQTLYMTPEFRNAIYNQLSEN 242
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.5 bits (63), Expect = 4.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 73 SIAPKKFIARLRKEKEEFDNYMQQDAHEFL 102
S A K+ I R R++ +EF+ Y Q+ ++EF+
Sbjct: 518 SRASKELIERRRRKMKEFEGYRQKKSNEFI 547
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 92 NYMQQDAHEFLNFLINHI--NEIILAERNQSTLKVQKNNSGENVTCNGSVPH 141
N+ D++ L F++ H + +I + K+ K E+V C G+ PH
Sbjct: 94 NFKGYDSYPILEFMLRHAIKSNVIFNGGKMALAKLPKVFGFEDVACKGAFPH 145
>SB_22260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 193 KCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFK 239
K D+E CND+K+K + Y + + R KL + A+ +KR K
Sbjct: 39 KLTQDSEIRCNDSKYK-EQTKMYHDKRHRATKHKLAVGQAILIKRDK 84
>SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2)
Length = 390
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 92 NYMQQDAHEFLNFLINHI--NEIILAERNQSTLKVQKNNSGENVTCNGSVPH 141
N+ D++ L F++ H + +I + K+ K E+V C G+ PH
Sbjct: 225 NFKGYDSYPILEFMLRHAIKSNVIFNGGKMALAKLPKVFGFEDVACKGAFPH 276
>SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 699
Score = 29.1 bits (62), Expect = 6.5
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 43 KAKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFL 102
K + E+ T + +L + KK+ G +A + + LRKE+ Y + +
Sbjct: 453 KTSPSQASESSPTLVTELKTQLEKLKKENGELAERLEVYELRKEQMHMQGYFDPLKTKVV 512
Query: 103 NFLINHINEIILAERNQSTLKVQKNN 128
+F +N N + +R + ++Q N
Sbjct: 513 HFSMNPSN-LARQQRAEEIKRLQDEN 537
>SB_59426| Best HMM Match : ERCC4 (HMM E-Value=0.027)
Length = 216
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 72 GSIAPKKFIARLRKEKEEFDNYMQQDA 98
GS+ +K++ LRKEKE F+ +++ A
Sbjct: 22 GSVEEQKYLTPLRKEKEAFEKLIREKA 48
>SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3)
Length = 682
Score = 28.7 bits (61), Expect = 8.6
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 123 KVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDV 182
KV+ ++ GE GS + HE+ + T SE + +N +S + +F+L+
Sbjct: 197 KVESDSLGEEGCPKGSANSTGDDEMSHELHEETTVSEKKSINSHCIS--ENIYFELERPE 254
Query: 183 GQN 185
+N
Sbjct: 255 DEN 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.135 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,960,415
Number of Sequences: 59808
Number of extensions: 529865
Number of successful extensions: 1471
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1397
Number of HSP's gapped (non-prelim): 73
length of query: 392
length of database: 16,821,457
effective HSP length: 84
effective length of query: 308
effective length of database: 11,797,585
effective search space: 3633656180
effective search space used: 3633656180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -