GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001053-TA|BGIBMGA001053-PA|undefined
         (67 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   1.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    18   7.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    18   7.7  

>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 1.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 31  CLGAVLQQSRGVIARLEWKLMETHSLPDL 59
           C+G  + ++ GV +  E +++E    P+L
Sbjct: 261 CVGGKVDETAGVYSGWEGQVLENMPQPNL 289


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 18.2 bits (35), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 45  RLEWKLMETHSLPDLGRVETSW 66
           +++  L    SLP++ RV+  W
Sbjct: 102 KIDRNLQFVVSLPEVERVQWIW 123


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 18.2 bits (35), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 45  RLEWKLMETHSLPDLGRVETSW 66
           +++  L    SLP++ RV+  W
Sbjct: 102 KIDRNLQFVVSLPEVERVQWIW 123


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,742
Number of Sequences: 317
Number of extensions: 411
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 114,650
effective HSP length: 44
effective length of query: 23
effective length of database: 100,702
effective search space:  2316146
effective search space used:  2316146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)