GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001053-TA|BGIBMGA001053-PA|undefined
         (67 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   1.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    22   8.7  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 29  IMCLGAVLQQSRGVIARLEWKLMETHSLPDLGRVE 63
           +M +G VL  +   +A+ E  ++ET  + D G +E
Sbjct: 299 LMAVGEVLDINEFDVAKFEKHIVETIQIDDTGELE 333


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 2   YVTSGHEKRSESAPSSRCE 20
           ++  GHE++S S P   CE
Sbjct: 458 FLLKGHERKSCSDPIPTCE 476


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,742
Number of Sequences: 5004
Number of extensions: 7635
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 67
length of database: 2,362,478
effective HSP length: 47
effective length of query: 20
effective length of database: 2,127,290
effective search space: 42545800
effective search space used: 42545800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)