GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001053-TA|BGIBMGA001053-PA|undefined
         (67 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    27   1.4  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    27   1.4  
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    26   3.3  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    25   5.7  
02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215...    25   5.7  
02_02_0166 - 7345920-7346137,7346549-7346687                           25   10.0 

>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 10  RSESAPSSRCEPQLLVNHRIMCLGAVLQQSRGVIARLEWKLM 51
           R  S+PS   +P   V     C   V ++SR V+A  E +LM
Sbjct: 616 RESSSPSLNKDPNAAVKKLTRCTAMVPKRSRTVVAAEEAQLM 657


>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 1   MYVTSGHEKRSESAPSSRCEPQLLVNHRIMCLGAVLQQSRGVIARLEWKLMETHSLPDLG 60
           + V  GH  ++ S+        L   HR++  G  LQ + G +  L    ++  S P L 
Sbjct: 744 LIVDEGHRLKNSSSKLFSLLNTLSFQHRVLLTGTPLQNNIGEMYNL-LNFLQPASFPSLA 802

Query: 61  RVETSWN 67
             E  +N
Sbjct: 803 SFEEKFN 809


>10_08_0829 -
           20871810-20872011,20873226-20873359,20873480-20877313,
           20878057-20878177,20878414-20878451,20879096-20879218,
           20879308-20879505,20880270-20880356
          Length = 1578

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 5   SGHEKRSESAPSSRCEPQLLVNHRIMCLGAVLQQSR 40
           S  E  + S P  RC+   ++   I CLGA  + SR
Sbjct: 115 SSLESTAISLPLKRCDSGTILQLNIQCLGAKSKTSR 150


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 7   HEKRSESAPSSRCEPQLLVN 26
           HEKR+ S   SR EP +LV+
Sbjct: 472 HEKRAWSVDFSRTEPSMLVS 491


>02_01_0319 -
          2148788-2148892,2149474-2149557,2149643-2149723,
          2150303-2150480,2150811-2150954,2151048-2151094,
          2151353-2151409,2151566-2151664,2151867-2151989,
          2152083-2152205,2152594-2152707,2152972-2153160,
          2153412-2153578,2153904-2153988,2155431-2155628,
          2155978-2156175
          Length = 663

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 33 GAVLQQSRGVIARLEWKLMETHSLPD 58
          GA+L+ + G + R  W+L   H  P+
Sbjct: 11 GALLRSTNGFLGRAVWELDPDHGTPE 36


>02_02_0166 - 7345920-7346137,7346549-7346687
          Length = 118

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 33  GAVLQQSRGVIARLEWKLMETHSLPDLGRVETS 65
           G+ L+ SRGV +   W+  E H     GR+  S
Sbjct: 81  GSTLENSRGVGSEEAWRDSEGHDRCPAGRLPRS 113


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,303
Number of Sequences: 37544
Number of extensions: 58825
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 14,793,348
effective HSP length: 47
effective length of query: 20
effective length of database: 13,028,780
effective search space: 260575600
effective search space used: 260575600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)