GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001053-TA|BGIBMGA001053-PA|undefined
         (67 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66617-1|AAC50695.1|  435|Homo sapiens SWI/SNF complex 60 KDa su...    28   4.1  
BC009368-1|AAH09368.3|  476|Homo sapiens SWI/SNF related, matrix...    28   4.1  
AF109733-1|AAD23390.1|  453|Homo sapiens SWI/SNF-related, matrix...    28   4.1  

>U66617-1|AAC50695.1|  435|Homo sapiens SWI/SNF complex 60 KDa
           subunit protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 21  PQLLVNHRIMCLGAVLQQSRGVIARLEWKLMETHSLPD 58
           PQ  ++ R+  L  +  Q+R VI +  W+ ++TH L D
Sbjct: 254 PQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQD 291


>BC009368-1|AAH09368.3|  476|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 21  PQLLVNHRIMCLGAVLQQSRGVIARLEWKLMETHSLPD 58
           PQ  ++ R+  L  +  Q+R VI +  W+ ++TH L D
Sbjct: 254 PQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQD 291


>AF109733-1|AAD23390.1|  453|Homo sapiens SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 21  PQLLVNHRIMCLGAVLQQSRGVIARLEWKLMETHSLPD 58
           PQ  ++ R+  L  +  Q+R VI +  W+ ++TH L D
Sbjct: 231 PQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQD 268


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,109
Number of Sequences: 224733
Number of extensions: 302398
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 73,234,838
effective HSP length: 46
effective length of query: 21
effective length of database: 62,897,120
effective search space: 1320839520
effective search space used: 1320839520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)