GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001053-TA|BGIBMGA001053-PA|undefined
         (67 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U80840-11|AAB37935.3|  392|Caenorhabditis elegans Hypothetical p...    25   6.5  

>Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK792.4b protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 3   VTSGHEKRSESAPSSRCEPQLLVNHRIMCLGAVLQQSRGVIARLEWKLMETH 54
           ++SG+    + A S + E ++ V HR+  +   +   R   A+ E  L++TH
Sbjct: 414 LSSGYSSNGDVAESIKSEAEI-VRHRLRFIEDDIDSLRDTGAQTEMDLLQTH 464


>Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical
           protein ZK792.4a protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 3   VTSGHEKRSESAPSSRCEPQLLVNHRIMCLGAVLQQSRGVIARLEWKLMETH 54
           ++SG+    + A S + E ++ V HR+  +   +   R   A+ E  L++TH
Sbjct: 429 LSSGYSSNGDVAESIKSEAEI-VRHRLRFIEDDIDSLRDTGAQTEMDLLQTH 479


>U80840-11|AAB37935.3|  392|Caenorhabditis elegans Hypothetical
           protein F08D12.12 protein.
          Length = 392

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 2   YVTSGHEKRSESAPSSR 18
           ++TS  E++SES P+SR
Sbjct: 364 FLTSSQERKSESTPTSR 380


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,672
Number of Sequences: 27539
Number of extensions: 44069
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 12,573,161
effective HSP length: 47
effective length of query: 20
effective length of database: 11,278,828
effective search space: 225576560
effective search space used: 225576560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)