GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001053-TA|BGIBMGA001053-PA|undefined
         (67 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   2.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               18   8.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    18   8.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      18   8.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 2.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 44  ARLEWKLMETHSLPDLGRVET 64
           AR+ W+ ++ +    LG V T
Sbjct: 129 ARINWEYLDKYKPTPLGAVAT 149


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 2.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 10   RSESAPSSRCEPQLLVNH 27
            + +  P S  +P+L VNH
Sbjct: 1281 QQQQLPPSSPQPRLTVNH 1298


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 15  PSSRCEPQLLVNHRIMCLGAVLQQSRGVIARLEWKL 50
           P +   PQL+    +  L  +L   R    RL W +
Sbjct: 325 PRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMM 360


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 7    HEKRSESAPSSRCEP 21
            +E+ +  AP+ RC P
Sbjct: 1689 YEELNHCAPNRRCPP 1703


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 36  LQQSRGVIARLEWKLMETHSLPDLGRVETSW 66
           LQ++      L+ K  E + + +LG + +S+
Sbjct: 391 LQETADAFKDLQDKYYEEYKMYELGELASSF 421


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 47  EWKLMETHSLPDLGRV 62
           E K+ E H +P L  V
Sbjct: 268 EEKIFEPHRIPQLQEV 283


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 7   HEKRSESAPSSRCEP 21
           HE+ S    + +CEP
Sbjct: 230 HEENSPLEDNIKCEP 244


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,624
Number of Sequences: 429
Number of extensions: 524
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 67
length of database: 140,377
effective HSP length: 45
effective length of query: 22
effective length of database: 121,072
effective search space:  2663584
effective search space used:  2663584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)