GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001053-TA|BGIBMGA001053-PA|undefined
         (67 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene...    25   4.7  
At5g57035.1 68418.m07119 protein kinase family protein contains ...    25   8.2  

>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
           repressor; identical to COP1 regulatory protein/FUSCA
           protein FUS1 GI:402685 SP:P43254
          Length = 675

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 7   HEKRSESAPSSRCEPQLLVN 26
           HEKR+ S   SR EP +LV+
Sbjct: 462 HEKRAWSVDFSRTEPSMLVS 481


>At5g57035.1 68418.m07119 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 786

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 16/59 (27%), Positives = 24/59 (40%)

Query: 8   EKRSESAPSSRCEPQLLVNHRIMCLGAVLQQSRGVIARLEWKLMETHSLPDLGRVETSW 66
           EK+ E         QL   H ++ LGA  +    V   +E   ++ H  P  G+   SW
Sbjct: 457 EKKEEFLKEISVLSQLRHPHVVLLLGACPENGCLVYEYMENGSLDCHISPKKGKPSLSW 515


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,172
Number of Sequences: 28952
Number of extensions: 44433
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 2
length of query: 67
length of database: 12,070,560
effective HSP length: 47
effective length of query: 20
effective length of database: 10,709,816
effective search space: 214196320
effective search space used: 214196320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)