Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001052-TA|BGIBMGA001052-PA|IPR002557|Chitin binding
Peritrophin-A
         (183 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.046
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)                29   1.7  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                27   6.9  
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)                27   6.9  
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)                27   6.9  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       27   9.2  
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)                 27   9.2  
SB_11255| Best HMM Match : Cache (HMM E-Value=4.6)                     27   9.2  

>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 80  CEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQTKFACDWWYNVDC 138
           C++ P   G Y +    C+ +  CH+    ++     C  G L+++    CDW  NVDC
Sbjct: 76  CKYKP--DGEYRDPYDACRGFIHCHNYNASYKP----CPGGLLYNEKTKQCDWPRNVDC 128


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 88  GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQTKFACDWWYNVDCSQ 140
           G YA+    C  ++ C      H+     C+ G  +  TK  CDW  NVDC +
Sbjct: 789 GYYADPRD-CSRFYQCD---AFHRAFLHRCSPGLKWSITKTTCDWPRNVDCDR 837



 Score = 31.5 bits (68), Expect = 0.43
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 67   YPIYHSVPETRFSCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQT 126
            Y + + +    + C+  P   G YA+    C  ++ C      H+     C  G  +   
Sbjct: 1225 YAVVNGMCVDTYFCKEKP--NGHYADPRD-CSRFYQCD---AFHRAFLHRCPAGLKWSVK 1278

Query: 127  KFACDWWYNVDCSQAIEHYKLNADPLKNPYVPKQKP 162
            K ACDW   VDC +       +  P   P  P  KP
Sbjct: 1279 KTACDWPRYVDCDRT-----TSTPPTPTPLTPTTKP 1309



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 79  SCEHVPI--HP-GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQTKFACDWWYN 135
           S  HVP    P G YA+ +  C  ++ C+   E        C  G L+   K  CD+ + 
Sbjct: 562 SVRHVPRLGKPRGYYADPKD-CAQFYFCYGSAESLLSR---CPRGLLWSVVKKTCDYPHL 617

Query: 136 VDCSQ 140
           VDCS+
Sbjct: 618 VDCSR 622



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 88   GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQTKFACDWWYNVDCSQAIEHYKL 147
            G YA+    C  ++ C      H+     C +G  +   K ACD    VDC + I     
Sbjct: 1349 GHYADPRD-CSRFYQCD---ASHKTFLHRCPDGLKWSVKKTACDLPLYVDCDRTIPTVAT 1404

Query: 148  N-ADPLKNPYVPKQKP 162
                P  +P  P  KP
Sbjct: 1405 GLPSPSPSPPTPTPKP 1420



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 88  GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQTKFACDWWYNVDCSQAIEHYKL 147
           G YA+    C  ++ C      H+     C  G  +   K ACDW   VDC +       
Sbjct: 894 GHYADPRD-CSKFYQCD---AFHRAFLHRCPAGLKWSVKKTACDWPRYVDCDRT-----T 944

Query: 148 NADPLKNPYVPKQKP 162
           +  P    + P  KP
Sbjct: 945 STPPTPTTHTPTIKP 959


>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
          Length = 518

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 88  GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQTKFACDWWYNVDCS 139
           G+YA  E  C  + +C  G   H+     C  G +F+     CDW + V C+
Sbjct: 464 GIYAEKEN-CYGFVLCGGGI-AHKKT---CPPGLIFNTDLMVCDWSHEVKCN 510


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 88  GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQTKFACDWWYNVDCSQ 140
           G YA+    C  + +C +G   +      C +   +D  K  C+W   VDC Q
Sbjct: 524 GKYADANN-CNGFVMCSNGYIYYMD----CPSNLRYDPAKGRCEWADTVDCGQ 571


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 110 HQGASFLCTNGTLFDQTKFACDWWYNVDC 138
           H+     C +G  +  TK  CDW   VDC
Sbjct: 139 HKAFLHSCPSGLKWSVTKTTCDWPRYVDC 167


>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
          Length = 220

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 110 HQGASFLCTNGTLFDQTKFACDWWYNVDC 138
           H+     C +G  +  TK  CDW   VDC
Sbjct: 46  HKAFLHSCPSGLKWSVTKTTCDWPRYVDC 74


>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
          Length = 660

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 13  LTGALLCGVVSDAAYLQRYEPYGLQFEQALIRK-PLREHEKPQDLRNVPGTPGVDYPIYH 71
           +T  ++ G+V DAAY   Y+   + F+   +    ++       + N+    G D  +YH
Sbjct: 198 VTKRMIFGIVEDAAYNGHYKKNPINFQMPHLNSIEVKVDGNKTPISNLKNIDGQDVDLYH 257


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 83   VPIHPGMYANVE-TGC-QAYHVCHDGREGHQGASFLCTNGTLFDQTKFAC 130
            +P  P  Y     T C    + C  G    +G  + CT GT  D T F C
Sbjct: 1479 LPCPPNTYVKCNSTWCPDNCYPCEKGTVCFEGKKYDCTPGTYSDGTGFPC 1528


>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
          Length = 1219

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 135 NVDCSQAIEHYKLNADPLKNPYVPKQKPEIHQEQPEEYNIPE 176
           +VD    +E  + N D    P + +QKPE + E+P   ++PE
Sbjct: 269 SVDDGPEVEIEEDN-DEKPPPEIEEQKPEANNEKPTNTDVPE 309


>SB_11255| Best HMM Match : Cache (HMM E-Value=4.6)
          Length = 459

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 136 VDCSQAIEHYKLNADPLKNPYVP 158
           + C++ I+ +K N D +KN Y P
Sbjct: 363 ISCTKRIQFFKANPDAMKNGYNP 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.138    0.452 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,256,290
Number of Sequences: 59808
Number of extensions: 322215
Number of successful extensions: 624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 18
length of query: 183
length of database: 16,821,457
effective HSP length: 78
effective length of query: 105
effective length of database: 12,156,433
effective search space: 1276425465
effective search space used: 1276425465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)