GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001052-TA|BGIBMGA001052-PA|IPR002557|Chitin binding
Peritrophin-A
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    28   0.95 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   3.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   5.0  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   6.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.7  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   8.8  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   8.8  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 135 NVDCSQAIEHYKLNADPLKNPYVPKQKPEIHQE 167
           N D   ++EH K++ D L N  + K++ EI  +
Sbjct: 520 NTDADVSLEHAKISFDSLDNSVIVKKEEEIENK 552


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 139 SQAIEHYKLNADPLKNPY 156
           SQA +HYKL+ + L+N Y
Sbjct: 246 SQAAQHYKLDVNSLRNAY 263


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 62   TPGVDYPIYHSVPETRFSCEHVPIHPGMYANVET 95
            +P + Y +   VP   F+ EH P H   Y  +ET
Sbjct: 2317 SPKMTYSLKLDVPLPFFALEHRPTHVISYTELET 2350


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 131 DWWYNVDCSQAIEHYKLNADPLKNPYVPKQKPEIHQEQ-PEEYNIPEEAYFR 181
           ++W +V+    +E   +  + L NP   +   EIH E+ P E  +   A FR
Sbjct: 526 NFWGSVNYGHVLERQNVYIEDLSNPSYKRLAREIHIEKLPSELKL-RNAEFR 576


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 44  RKPLREHEKPQDLRNVPGTPGVDYPIYHS 72
           R+P R+   PQ   NVPGT     PI  S
Sbjct: 935 RRPPRQLIPPQQSTNVPGTSKPSGPITSS 963


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 149 ADPLKNPYVPKQKPEIHQEQPEEYNIPEEAYFRK 182
           A+P +  ++ K+KP+I +E+ +  N+  E +  K
Sbjct: 432 AEPTERAFLKKEKPQISKEK-KNPNVTHEEFVEK 464


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 152 LKNPYVPKQKPEIHQEQPEEY 172
           +KNP V K  PEIH E  E Y
Sbjct: 287 VKNPSVTKGHPEIH-ESSENY 306


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 121 TLFDQTKFACDWWYNVDCSQAIEHYKLNAD-PLKNPYV--PKQKPEIHQE 167
           +LF   + + D  +++ C   I H ++NA+  LKN     P   P+  Q+
Sbjct: 178 SLFSNVQSSLDDLFSIACLTKIAHRRMNANAALKNQATRKPSSSPQTTQD 227


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.452 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 955,789
Number of Sequences: 5004
Number of extensions: 41831
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 8
length of query: 183
length of database: 2,362,478
effective HSP length: 69
effective length of query: 114
effective length of database: 2,017,202
effective search space: 229961028
effective search space used: 229961028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)