GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001052-TA|BGIBMGA001052-PA|IPR002557|Chitin binding
Peritrophin-A
         (183 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1399 - 26274064-26274303,26274395-26274652,26274791-262749...    28   5.1  
05_01_0555 + 4867494-4867577,4868987-4869607                           28   5.1  
04_04_0569 + 26293891-26294931                                         28   5.1  
02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139           28   5.1  
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458...    27   6.8  
01_01_0118 - 871481-872606,872795-872950,873051-873817                 27   6.8  
10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696           27   9.0  
04_01_0377 - 4970034-4970687                                           27   9.0  

>07_03_1399 -
           26274064-26274303,26274395-26274652,26274791-26274916,
           26275012-26275109,26275200-26275265,26275350-26275395
          Length = 277

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 112 GASFLCTNGTLFDQTKFACDWWYNVDCSQAIEHYKLNADPLKNPYVPKQKPEIHQE 167
           GA F C    + D T +      N+ C + I+ Y LN   ++   VPK   ++++E
Sbjct: 7   GAKFDCLLFDM-DDTLYPLSLGINLACRKNIQDYMLNKLQIEESLVPKMCLDLYRE 61


>05_01_0555 + 4867494-4867577,4868987-4869607
          Length = 234

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 3   GEMGKAVLRALTGALLCGVVSDAAYLQRYEPYGLQF 38
           G  G  V++A+T  +   V + AAY  R EP+ L F
Sbjct: 78  GGGGGRVIQAITMLVATAVTAQAAYRARREPWDLAF 113


>04_04_0569 + 26293891-26294931
          Length = 346

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 73  VPETRFSCEHVPIHPGMYANVETGCQAYHVCHDGRE 108
           +P+ R    HVP      A   +GC+  +VC D ++
Sbjct: 141 LPDPRLFATHVPFTSLPSAAAASGCKVVYVCRDPKD 176


>02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139
          Length = 172

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/68 (26%), Positives = 25/68 (36%)

Query: 20  GVVSDAAYLQRYEPYGLQFEQALIRKPLREHEKPQDLRNVPGTPGVDYPIYHSVPETRFS 79
           G V D A   R EP G ++  A   K  +     ++ +      G     YH+ P  R S
Sbjct: 60  GCVPDGAAAHRLEPSGGEYNYAAASKGSKVLAHNREAKGAANILGATLLRYHTAPLPRSS 119

Query: 80  CEHVPIHP 87
               P  P
Sbjct: 120 TTSAPRPP 127


>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
            34045969-34046092,34046168-34046294,34046821-34046882,
            34046972-34048023,34048167-34048556,34048667-34052628,
            34052710-34052796,34052885-34053004,34053096-34053152
          Length = 2122

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 34   YGLQFEQALIRKPLREH---EKPQDLRNVPGTPGVDYPIYH 71
            YG+  E+      + +H   +KP  +RN+P  P VD    H
Sbjct: 1991 YGISMEENQFEPKVEDHLLIKKPVSIRNIPRNPLVDAVAAH 2031


>01_01_0118 - 871481-872606,872795-872950,873051-873817
          Length = 682

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 56  LRNVPGTPGVDYPIYHSVPE-TRFSCEHVP--IHPGMYANVETGCQAYHV-CHDGREGHQ 111
           LR V   P +++P+ H +P    F+C H+     P      E G  +Y + C D +    
Sbjct: 23  LRFVVPDPDIEWPLIHGIPACPPFTCGHLSKVASPFHRRGYECGVASYELTCTDDK---- 78

Query: 112 GASFLCTNGTLF 123
            A+    NGT F
Sbjct: 79  -ATIQIDNGTYF 89


>10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696
          Length = 693

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 119 NGTLFDQTKFACDWWYNVDCSQAIEHYKLNAD 150
           N +L+    F C  ++++D +QAI+ Y +NAD
Sbjct: 349 NRSLYGLVSFLCTRYHHIDFNQAIK-YLVNAD 379


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 95  TGCQAYHVCHDGREGHQGASFLCTNGTLFDQ 125
           TGCQ+   C   R G QG    C+N     Q
Sbjct: 51  TGCQSGACCSSQRCGSQGGGATCSNNQCCSQ 81


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.138    0.452 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,042,549
Number of Sequences: 37544
Number of extensions: 262127
Number of successful extensions: 507
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 9
length of query: 183
length of database: 14,793,348
effective HSP length: 78
effective length of query: 105
effective length of database: 11,864,916
effective search space: 1245816180
effective search space used: 1245816180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)