GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001052-TA|BGIBMGA001052-PA|IPR002557|Chitin binding
Peritrophin-A
         (183 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   4.6  
AL032630-12|CAA21567.1|  260|Caenorhabditis elegans Hypothetical...    27   6.0  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    27   6.0  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    27   6.0  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL032653-6|CAA21716.1|  152|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF026208-2|AAB71269.3|  774|Caenorhabditis elegans Prion-like-(q...    27   8.0  
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
           protein F39C12.1 protein.
          Length = 5105

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 151 PLKNPYVPKQKPEIHQEQPEEYNIPEEAYF 180
           P   P+VP+     +++   EY  PE+AYF
Sbjct: 818 PTPTPHVPQALSVRNEKDDFEYETPEDAYF 847


>AL032630-12|CAA21567.1|  260|Caenorhabditis elegans Hypothetical
           protein Y62H9A.12 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 119 NGTLF--DQTKFACDWWYNVDCSQAIEHYKLNADPLKNPYVPKQKPEIHQEQPEEY 172
           NGTLF  + T+ ACD  +N D +   + Y  N    K  +     P    E+PE+Y
Sbjct: 98  NGTLFLLNATRIACDNGWNPDGAIHFKVYTENISTCKFTFKTSGAP----EKPEDY 149


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
            protein LIN-59 protein.
          Length = 1312

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 111  QGASFLCTNGTLFDQ-TKFACD---WWYNVDCSQAIEHYKLNADPLKNP 155
            +G +  C  G L ++ T   CD   +W +VDC Q +      A   KNP
Sbjct: 964  KGNAVRCICGALDEEGTMVQCDTCHFWLHVDCCQYVVRSNEKAQKSKNP 1012


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
            lineage protein 59 protein.
          Length = 1312

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 111  QGASFLCTNGTLFDQ-TKFACD---WWYNVDCSQAIEHYKLNADPLKNP 155
            +G +  C  G L ++ T   CD   +W +VDC Q +      A   KNP
Sbjct: 964  KGNAVRCICGALDEEGTMVQCDTCHFWLHVDCCQYVVRSNEKAQKSKNP 1012


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 146 KLNADPLKNPYVPKQKPEIHQEQPEEYNIPE 176
           K+  D  K P  P++KPE   ++PE    PE
Sbjct: 101 KIEDDVKKGPKQPRKKPENLPKKPESLKEPE 131


>AL032653-6|CAA21716.1|  152|Caenorhabditis elegans Hypothetical
          protein Y54E5B.4 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 62 TPGVDYPIYHSVPETRFSCEHVPIHPGMYAN 92
          T G  YP   + PE  F  E +P HP +Y+N
Sbjct: 60 TFGPQYPF--NSPEVMFVGETIPAHPHIYSN 88


>AF026208-2|AAB71269.3|  774|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 40
           protein.
          Length = 774

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 125 QTKFACDWWYNVDCSQAIE--HYKLNADPLKNPYVPKQKPEIHQEQPEEYNIPEEAYFR 181
           Q +F     YN    Q ++  H +     ++ P+ P Q+P I  +Q      P+ A  R
Sbjct: 515 QQQFYNQQQYNAQTPQQVQQVHQQTPQQQVQQPHQPNQQPHIPSQQLPRQQAPQPAQNR 573


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
          protein Y81B9A.1 protein.
          Length = 579

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 2  CGEMGKAVLRALTGALLCGVVSDAAYLQRYEPYGLQFE 39
          CG MG A  +AL    + GV  +A  +Q+   +G + E
Sbjct: 56 CGSMGHATAQALCDLPIGGVTPEAQTMQQETAWGFRRE 93


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.138    0.452 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,309,747
Number of Sequences: 27539
Number of extensions: 246733
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 8
length of query: 183
length of database: 12,573,161
effective HSP length: 77
effective length of query: 106
effective length of database: 10,452,658
effective search space: 1107981748
effective search space used: 1107981748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)