GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001051-TA|BGIBMGA001051-PA|IPR004045|Glutathione
S-transferase, N-terminal, IPR012336|Thioredoxin-like fold
         (68 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   0.70 
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    24   2.2  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    23   3.8  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    23   5.0  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    23   6.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    22   8.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    22   8.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    22   8.7  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 25  NIPNVKYVDVDLLAEDHLKEEFLKLNPQHTIPMLTD 60
           ++PNV  + +     D L++  +K+N +H  P+  D
Sbjct: 413 SLPNVLQLQLKRFDYDMLRDMMVKINDRHEFPLEID 448


>SPAPB2B4.02 |grx5||monothiol glutaredoxin
          Grx5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 20 VIEALNIPNVKYVDVDLLAEDHLKEEFLKLNPQHTIPML 58
          ++   N+ + K V  ++L+ D L+E   + +   TIP L
Sbjct: 60 ILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQL 98


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
          Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 31 YVDVDLLAEDHLKEEFLKLNPQHTIPMLTD 60
          Y  V+L+  D  + + L LNP + +P LT+
Sbjct: 52 YTGVELVDLDK-RWDILSLNPNYKLPKLTE 80


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 44  EEFLKLNPQHTIPMLT 59
           EE LKL PQH I M T
Sbjct: 515 EEELKLPPQHRICMTT 530


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 26  IPNVKYVDVDLLAEDHLKEEFLKLNPQHTI 55
           +PN++   V+ L ++H+ + F  LN ++ +
Sbjct: 344 VPNMESETVERLVKEHVTKVFNSLNSKNKL 373


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 28  NVKYVDVDLLAEDHLK 43
           N K++D+D L ED+L+
Sbjct: 888 NFKFLDLDELLEDYLE 903


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 11  SPPVRAVYMVIEALNIPN 28
           SP +RA + +  +LNIP+
Sbjct: 138 SPGIRAGFCIFPSLNIPS 155


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 45  EFLKLNPQHTIPMLTDDKFVIWD 67
           EFLK+N  +  P L+   F + D
Sbjct: 413 EFLKINFSYLTPTLSQKLFTVLD 435


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,194
Number of Sequences: 5004
Number of extensions: 10687
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 8
length of query: 68
length of database: 2,362,478
effective HSP length: 48
effective length of query: 20
effective length of database: 2,122,286
effective search space: 42445720
effective search space used: 42445720
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)