GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001051-TA|BGIBMGA001051-PA|IPR004045|Glutathione
S-transferase, N-terminal, IPR012336|Thioredoxin-like fold
         (68 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  

>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 19   MVIEALNIPNVKYVDVDLLAEDHLKEEFLKLNPQHTIPMLTDDKFVI 65
            ++ E LN+   +   VD L ED ++E+    N +H   +L DD +V+
Sbjct: 1253 LLAELLNLVQKRSFIVDSLEEDRIREKQEDENIKH---VLEDDGYVV 1296


>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 2   VLTLYKMD--ASPPVRAVYMVIEALNIPNVKYVDVDLLAEDHLKEEFLKLNPQHTIPMLT 59
           +L  YK +   S P   V++    +N+P+V    V  L ED   ++ L L     + M T
Sbjct: 218 ILEKYKEENLISNPESIVFLPHVNVNVPSVS---VGSLGEDKFLDDALPLPNSSPVAMAT 274

Query: 60  DD 61
           DD
Sbjct: 275 DD 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.140    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,263
Number of Sequences: 59808
Number of extensions: 67699
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 16,821,457
effective HSP length: 47
effective length of query: 21
effective length of database: 14,010,481
effective search space: 294220101
effective search space used: 294220101
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)