Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001050-TA|BGIBMGA001050-PA|undefined
(94 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0774 + 7063465-7064011,7065183-7065791,7067905-7068464,706... 27 2.1
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 27 2.8
03_01_0215 + 1696250-1696573,1697653-1697793,1698267-1698539,169... 26 3.7
04_04_0719 + 27541129-27541520,27541607-27541965,27542061-275421... 26 4.8
03_05_0957 + 29195549-29196706,29198590-29198868 26 4.8
09_06_0137 - 21080263-21081894 25 6.4
09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359... 25 6.4
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 25 6.4
02_05_0505 - 29605860-29606102,29606331-29606677,29607291-296074... 25 6.4
02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816 25 6.4
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611... 25 8.5
>12_01_0774 +
7063465-7064011,7065183-7065791,7067905-7068464,
7069411-7069530
Length = 611
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 2 IQDRLDEDYLNIICAVEGVYPKPELNILVGNRLLIDTKSS 41
I+D+ +L+I CA EG + +P + +V N +L D +S
Sbjct: 479 IRDKQGRTFLHIACADEG-WQRPTVRYVVKNPMLHDLLNS 517
>04_04_1690 -
35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 9 DYLNIICAVEGVYPKPELNILVGNRLLIDTKSSINLIDGRYTALTTAVVNVNSLPTTVEL 68
D L +ICA+ + L +R I S+ I YTAL+ + SL +T+E
Sbjct: 606 DVLRLICALAA---HRKFAALFVDRGGIQKILSVPRIAQTYTALSACLFTFGSLQSTMER 662
Query: 69 LCEMQVPLAN 78
+C + N
Sbjct: 663 ICALSSDTLN 672
>03_01_0215 +
1696250-1696573,1697653-1697793,1698267-1698539,
1698755-1698814,1698890-1699033
Length = 313
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 29 LVGNRLLIDTKSSINLIDGRYTALTTAVVNVNSLP 63
+V NRL I N++ GRY + T + +V S P
Sbjct: 235 VVRNRLQIYNDMVFNVVLGRYKSCTMLICSVGSQP 269
>04_04_0719 +
27541129-27541520,27541607-27541965,27542061-27542189,
27542278-27542409,27542522-27542794,27542899-27543299,
27543424-27543567
Length = 609
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 28 ILVGNRLLIDTKSSINLIDGRYTALTTAVVNVNSLPTTVELL 69
IL+GNR+ +D S+ + G + + V+ T V LL
Sbjct: 326 ILLGNRIKLDIPGSLLALTGTHPMIAALAVDPRRQSTPVYLL 367
>03_05_0957 + 29195549-29196706,29198590-29198868
Length = 478
Score = 25.8 bits (54), Expect = 4.8
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 2 IQDRLDEDYLNIICAVE---GVYPKPELNILVGNRLLIDTKSSINLIDGRYTALTTAVVN 58
+Q LDE +L+ + V+ G Y P+ + V + D + +I ++ L +AV+N
Sbjct: 260 VQKVLDEAFLSRLETVKELMGKYASPDFRVAVDS----DERDAIQRLN-----LQSAVLN 310
Query: 59 VNSLPTTVELLCEMQV 74
V L +E + EM+V
Sbjct: 311 VRHLLWLIERMVEMRV 326
>09_06_0137 - 21080263-21081894
Length = 543
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 49 YTALTTAVVNVNSLPTTVELLCEM 72
YTA+ A+ +P ELLC+M
Sbjct: 287 YTAVIDAMYRAGQVPRAQELLCQM 310
>09_04_0739 -
19833462-19834456,19835272-19835333,19835846-19835937,
19836271-19836540,19836795-19836913,19836947-19837778
Length = 789
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 17 VEGVYPKPELNILVGNRLLIDTKSSINLIDGRYTALTTAVVNVNSLPTT 65
+ GV P P + VGN + SS N + + T + N L TT
Sbjct: 99 LRGVRPVPGRHACVGNPEDLVVTSSSNFLGNKKAQPTNGLKTTNGLKTT 147
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 53 TTAVVNVNSLPTTVELLCEMQVPLANYYSKKRDLF 87
TT N + +P V LL E+Q L N Y + F
Sbjct: 906 TTVSYNESEMPLYVYLLRELQNKLDNLYPSSKPFF 940
>02_05_0505 -
29605860-29606102,29606331-29606677,29607291-29607472,
29609540-29610282
Length = 504
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 12 NIICAVEGVYPKPELNILVGNRLLIDTKSSINLIDGR-----YTALTTAVVNVNSLPTTV 66
N++ ++ V+P ++ + GN +++N I+GR A+ V L TTV
Sbjct: 290 NVLGYLQNVFPDMDVISVSGNYCSDKKPTAVNWIEGRGKSVVCEAIIKGDVVQKVLKTTV 349
Query: 67 ELLCEMQV 74
E L E+ +
Sbjct: 350 EKLVELNI 357
>02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816
Length = 343
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 8 EDYLNIICAVEGVYPKPELNIL--VGNRLLIDTKSSINLIDGRYTALTTAVVNVNSLPTT 65
E LN+ ++ +P L+ L +GN + T ++ + +T++T+ N++SLP
Sbjct: 78 EKQLNLQMSLN-YFPVENLDRLARIGNPSAVSTGLRLSYENNEHTSITSGSGNMSSLPIM 136
Query: 66 VELLCEMQVPL 76
+ E+ L
Sbjct: 137 ASFVDEVMAEL 147
>12_02_0709 - 22359705-22360292,22360396-22360560,22360650-22361157,
22361159-22361577,22362261-22362722,22362853-22364415
Length = 1234
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 2 IQDRLDEDYLNIICAVEGVYPKPELNIL-VGNRLLIDTKSSINLIDGRYTALTTAVVNVN 60
IQ+ D+ + A++ P+ ++ VG R+L + +N+ GRY + N +
Sbjct: 1142 IQEDQDDSLRSTAAALDEATPENMRKLVGVGERMLGQQVTRVNVETGRYEKVPDEGSNAD 1201
Query: 61 SLPTTVELLCE 71
+L L E
Sbjct: 1202 ALVRMARTLSE 1212
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,068
Number of Sequences: 37544
Number of extensions: 85744
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 12
length of query: 94
length of database: 14,793,348
effective HSP length: 70
effective length of query: 24
effective length of database: 12,165,268
effective search space: 291966432
effective search space used: 291966432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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