Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001050-TA|BGIBMGA001050-PA|undefined
         (94 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       30   0.23 
SB_51551| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.6  
SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)                    27   2.9  

>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 3    QDRLDEDYLNIICAVEGVYPKPELNILVGNRLLIDTKSSINLIDGRYTALT 53
            +D  + D   + C V G YP+P L  L  N LL D        DG+   LT
Sbjct: 1324 EDVTEGDDCRLTCKVSG-YPEPTLEWLKNNELLSDNDRFKTRFDGQTGTLT 1373


>SB_51551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 21  YPKPELNILVGNRLLIDTKSSINLIDGRYTAL 52
           +  PE+ +  GN + +  +SS+++ +G++TAL
Sbjct: 120 FKAPEVIVSSGNEMTVRFQSSLSVSNGKFTAL 151


>SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 26  LNILVGNRLLIDTKSSINLIDGRYTALTTAVVNVNSLPTTVELLCEMQVPLAN 78
           L IL+ + +L+ TKS  +LI G +  L   V   + +P    L+   +VP A+
Sbjct: 167 LYILMDDGILVATKSGGHLITGFHEPLPAGVNPADWVPQKSFLINRREVPYAS 219


>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
          Length = 822

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 12  NIICAVEGVYPKPELNILVGNRLLIDTKSSINLIDGR 48
           NI+  VE  Y    +++L    +L+D + ++  +D R
Sbjct: 705 NIVLEVEKEYEDSRIDVLFDRLMLLDLRENVGRLDSR 741


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,689
Number of Sequences: 59808
Number of extensions: 103367
Number of successful extensions: 212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 4
length of query: 94
length of database: 16,821,457
effective HSP length: 70
effective length of query: 24
effective length of database: 12,634,897
effective search space: 303237528
effective search space used: 303237528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)