Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001050-TA|BGIBMGA001050-PA|undefined
(94 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 0.36
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 25 1.4
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 25 1.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 1.9
SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa... 25 2.5
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 24 3.3
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 23 5.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 23 7.7
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 23 7.7
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 27.5 bits (58), Expect = 0.36
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 25 ELNILVGNRLLIDTKSSINLIDGRYTALTTAVVNVN 60
EL + VGNR+ K +++LIDG T N+N
Sbjct: 756 ELLVEVGNRMKNGGKINMSLIDGEEPNKTVVEANIN 791
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 1.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 35 LIDTKSSINLIDGRYTALTTAVVNVNSL 62
L+ T+ IN+ RYTA ++N N L
Sbjct: 13 LLQTRKFINITSPRYTAGRPVILNENQL 40
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 1.4
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 23 KPELNILVGNRLLIDTKSSI-NLIDGRYTALTTAVVNVNSLPTTVELLCEMQVPLAN 78
KP L++ NRLLI+ +SI N+ + N ++ P T+ L PL+N
Sbjct: 90 KPSLSVWENNRLLIEKLTSILNIPSSQIN--HEFYKNSSAWPITIRNLIHRHQPLSN 144
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.0 bits (52), Expect = 1.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 22 PKPELNILVGNRLLIDTKSSINLIDGRYTALTTAVVNVNSLPT 64
P+ ++ G+RL +D+ I++ D Y+ L N++PT
Sbjct: 619 PEKRNFVISGSRLSVDSSPWISIQDYGYSELGNVYFVQNAIPT 661
>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
L22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 24.6 bits (51), Expect = 2.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 9 DYLNIICAVEGVYPKPELNILVGN 32
D+L ++ +GVY N++VGN
Sbjct: 89 DWLRVVSTKKGVYELRYYNVVVGN 112
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 3.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 11 LNIICAVEGVYPKPELNILVGNRLLIDTKSSINLIDGRYTALTTAVVNVNSLP 63
L ++ V+ PKP+ L +R L + G+YT + TA +S+P
Sbjct: 172 LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP 224
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 23.4 bits (48), Expect = 5.8
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 1 MIQDRLDEDYLNIICAVEGVYPKPELNILVGNRLLIDTKSSINLIDGR--YTALTTAVVN 58
+IQ + Y +++ A E +Y P L + +L+ ++ L+ G+ Y + +++
Sbjct: 229 LIQRTYGDHYFSLVLASETIYSLPSLENFL--YMLLKNTKNLALVAGKDLYFGVGGSILE 286
Query: 59 VNS 61
NS
Sbjct: 287 FNS 289
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 23.0 bits (47), Expect = 7.7
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 21 YPKPELNILVG---NRLLIDTKSSINLIDGRYTALTTAVVNVNSLPTTV 66
YP L G N +IDT + YT +TT +L TTV
Sbjct: 210 YPGSVTTTLTGTPSNGTVIDTVEVPTTTNYGYTTITTGYTGSTTLTTTV 258
Score = 23.0 bits (47), Expect = 7.7
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 21 YPKPELNILVG---NRLLIDTKSSINLIDGRYTALTTAVVNVNSLPTTV 66
YP L G N +IDT + YT +TT +L TTV
Sbjct: 444 YPGSVTTTLTGAPSNGTVIDTVEIPTTTNYGYTTITTGYTGSTTLTTTV 492
Score = 23.0 bits (47), Expect = 7.7
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 21 YPKPELNILVG---NRLLIDTKSSINLIDGRYTALTTAVVNVNSLPTTV 66
YP L G N +IDT + YT +TT +L TTV
Sbjct: 522 YPGSVTTTLTGAPSNGTVIDTVEVPTTTNYGYTTITTGYTGSTTLTTTV 570
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 23.0 bits (47), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 40 SSINLIDGRYTALTTAVVNVNSLPTTVELLCEMQVPLANYY 80
SS N ID L++ + +N+L ++C L NY+
Sbjct: 300 SSPNNIDNYDGGLSSQEIKINALIAKDGIICSRANNLPNYF 340
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,641
Number of Sequences: 5004
Number of extensions: 15523
Number of successful extensions: 47
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 14
length of query: 94
length of database: 2,362,478
effective HSP length: 62
effective length of query: 32
effective length of database: 2,052,230
effective search space: 65671360
effective search space used: 65671360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)
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