Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001049-TA|BGIBMGA001049-PA|undefined
         (89 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    26   0.96 
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   1.7  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   2.2  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    24   2.9  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    23   5.1  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    23   5.1  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    23   6.7  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    23   6.7  
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    23   8.9  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    23   8.9  

>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 0.96
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 18  TARLVPKDLNFLQNLNRIKVAEDILAWVNFNGTL 51
           T   + KD+N LQ LN   + +D+ A  NF   +
Sbjct: 99  TLLFMKKDINSLQTLNPDLILKDVKATQNFRSII 132


>SPAC6B12.05c |||chromatin remodeling complex subunit
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 59 DETGDDVVDMHTGQQVLERCLSTEEKLEKPD 89
          +E GDD +    GQ VL+     EE LE+ D
Sbjct: 32 EELGDDALAAEEGQSVLDE-QEIEEALEEDD 61


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 20  RLVPKDLNFLQNLNRIKVAEDILAWVNFNGTLMKCIVAGDETGDDVVDMHTG 71
           +LV  DL+   +++ ++V E        +G +   +V+ D+T D ++ M TG
Sbjct: 87  KLVATDLDVDFDISSVRVTEKPSVLEEKSGVIQFRVVSNDDTADSMI-MLTG 137


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 46  NFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCL 79
           + N    K ++  D T +++VD  T ++ L+R L
Sbjct: 521 DLNNLNEKFVLGDDATAEEIVDAETEKKQLDRSL 554


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 60  ETGDDVVDMHTGQQVLERCLSTEEKLEK 87
           ET   V+D  T QQ LE+ L  E+K+ K
Sbjct: 698 ETSRTVMDRRTFQQTLEK-LMQEKKVRK 724


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 33  NRIKVAEDILAWVNFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCLSTEEKLEKP 88
           N +  A + ++  N +G++     +G     DV+    G  VL   L  EE LE+P
Sbjct: 723 NTVFFASEAISQKN-SGSIRGAFDSGILAARDVLASLIGNVVLPNTLVIEENLEQP 777


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 72  QQVLERCLSTEEKLEKP 88
           QQ+L  C  TEE+++ P
Sbjct: 779 QQILSHCNKTEEEIKLP 795


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 4   TQWGRGCLYHIKHVTAR--LVPKDLNFLQNLNRIKVAE 39
           +QWGR C + I+  + R  ++  D++ L  +  IK  E
Sbjct: 816 SQWGRKCSHKIREYSKRFGVLFGDISLLLQVRPIKGLE 853


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 190

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 44 WVNFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCL 79
          +  F GTL KC      +  DV D   G+Q L + L
Sbjct: 24 YCEFEGTLKKCKEWLKSSHPDVYDKLYGEQDLSKDL 59


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 10  CLYHIKHVTARLVPKDLNFLQNLNRIK 36
           CL+++  V   + P+D N L++L+ I+
Sbjct: 173 CLHNVFLVGEMITPEDENVLRSLSDIR 199


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,877
Number of Sequences: 5004
Number of extensions: 14633
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 10
length of query: 89
length of database: 2,362,478
effective HSP length: 61
effective length of query: 28
effective length of database: 2,057,234
effective search space: 57602552
effective search space used: 57602552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)