Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001049-TA|BGIBMGA001049-PA|undefined
         (89 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    27   2.8  
SB_36463| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_13496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 55 IVAGDETGDDVVDMHTGQQVLERCLSTEEKLEK 87
          +V  D  GD+ V++   +Q L+R +  +EK+E+
Sbjct: 55 VVVTDLDGDNAVELPKTEQALKRVIWQKEKMER 87


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 46   NFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCLSTEEKLE 86
            + NG ++  I+ G+  G  V+D +TG     + L  E+  E
Sbjct: 3665 SLNGKVLFSILGGNSDGKFVIDQNTGVVTTNKSLDYEDVTE 3705



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 46   NFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCLSTEEKLE 86
            + NG ++  I+ G+  G  V+D +TG     + L  E+  E
Sbjct: 4102 SLNGKVLFSILEGNSDGKFVIDQNTGVVTTNKSLDYEDVTE 4142



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 46   NFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCLSTEEKLE 86
            + NG ++  I+ G+  G  V+D +TG     + L  E+  E
Sbjct: 5413 SLNGKVLFSILEGNSDGKFVIDQNTGVVTTNKSLDYEDVTE 5453



 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 46   NFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCLSTEE 83
            + NG ++  I+ G+  G  V+D +TG     + L  E+
Sbjct: 4539 SLNGKVLFSILEGNSDGKFVIDQNTGVVTTNKSLDYED 4576


>SB_36463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 26 LNFLQ-NLNRIKVAEDILAWVNFNGTLMK-CIVA 57
          L+F+   L R  V ED+  WVNF   ++  C+ A
Sbjct: 46 LSFIYARLKRFMVIEDVAFWVNFAFLMLNLCVTA 79


>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 49 GTLMKCIVAGDETGDDVVDMHTGQQVLERCLSTEEKLEKPD 89
          G L   +V G+ET     +++T Q   +  ++ EE  E P+
Sbjct: 41 GALKDGVVEGNETEGGQEELNTSQDSQDESMTAEETDEPPN 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,255
Number of Sequences: 59808
Number of extensions: 108670
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 9
length of query: 89
length of database: 16,821,457
effective HSP length: 66
effective length of query: 23
effective length of database: 12,874,129
effective search space: 296104967
effective search space used: 296104967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)