Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001049-TA|BGIBMGA001049-PA|undefined
         (89 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY354497-1|AAR10443.1| 2916|Homo sapiens cadherin protein protein.     29   2.3  
BC014516-1|AAH14516.1|  306|Homo sapiens abhydrolase domain cont...    28   5.3  
AK002204-1|BAA92133.1|  306|Homo sapiens protein ( Homo sapiens ...    28   5.3  

>AY354497-1|AAR10443.1| 2916|Homo sapiens cadherin protein protein.
          Length = 2916

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 13   HIKHVTARLVPKDLNFLQNLNRIKVAEDILAWVNFNGTLMKCIVAGDETGDDVVDMHTGQ 72
            +I+H+   ++P++L   + ++ IK ++ +    ++NG L   IVA D+ G   +D  TG 
Sbjct: 951  NIRHL---IIPENLKPTKIMSLIKSSDHLQQ--HYNGKLHFSIVADDKDGHFEIDSSTGD 1005

Query: 73   QVLERCLSTE 82
              L + L  E
Sbjct: 1006 LFLSKELDYE 1015


>BC014516-1|AAH14516.1|  306|Homo sapiens abhydrolase domain
           containing 10 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 63  DDVVDMHTGQQVLERCLSTE 82
           DD+V  HT  QV +R LST+
Sbjct: 249 DDIVPWHTSMQVADRVLSTD 268


>AK002204-1|BAA92133.1|  306|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11342 fis, clone PLACE1010800. ).
          Length = 306

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 63  DDVVDMHTGQQVLERCLSTE 82
           DD+V  HT  QV +R LST+
Sbjct: 249 DDIVPWHTSMQVADRVLSTD 268


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,659
Number of Sequences: 224733
Number of extensions: 465672
Number of successful extensions: 3710
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3708
Number of HSP's gapped (non-prelim): 3
length of query: 89
length of database: 73,234,838
effective HSP length: 67
effective length of query: 22
effective length of database: 58,177,727
effective search space: 1279909994
effective search space used: 1279909994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)