Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001049-TA|BGIBMGA001049-PA|undefined
(89 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 28 1.1
05_07_0316 + 29191558-29192008,29192764-29192831 27 1.4
11_03_0193 - 11437237-11437533,11438834-11439643 27 1.8
10_08_0672 + 19762340-19762432,19762543-19762735,19763225-197632... 27 1.8
07_03_0630 - 20097672-20097772,20097983-20102012 27 1.8
10_05_0095 + 9140375-9140676,9140895-9141123,9141444-9141488 27 2.4
12_02_1081 + 25914180-25914371,25918121-25919104 25 5.6
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 25 5.6
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272... 25 7.5
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705... 25 7.5
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 25 9.9
08_02_1422 - 26971803-26971900,26974083-26975061 25 9.9
06_03_0593 + 22596372-22596384,22596856-22597037,22597119-225973... 25 9.9
01_06_1143 - 34862005-34862370,34862494-34862628,34862742-348629... 25 9.9
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 8 RGCLYHIKHVTARLVPKDLNFLQNL 32
RGC YH+K R P+D L NL
Sbjct: 256 RGCRYHLKEYDRRNYPRDSRELFNL 280
>05_07_0316 + 29191558-29192008,29192764-29192831
Length = 172
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 10 CLYHIKHVTARLVPKDLNFLQNLNRIKVAEDILAWV 45
C + VT RL+ DL ++ + R K AE + AW+
Sbjct: 104 CCLCVYIVTMRLISVDLPYVYRVCRGKDAEAVAAWI 139
>11_03_0193 - 11437237-11437533,11438834-11439643
Length = 368
Score = 27.1 bits (57), Expect = 1.8
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 17 VTA-RLVPKDLNFLQNLNRIKV------AEDILAWVNFNGTLMKCI-VAGDETGDDVVDM 68
VTA L P L FL+ L R+ V A+D + T + C+ V GD+ G +VD
Sbjct: 61 VTALSLPPSKLPFLRRLMRLLVHSGVFAADDTTDTGTYRLTPLSCLLVDGDDDGAAIVDG 120
Query: 69 HTGQ 72
H Q
Sbjct: 121 HPSQ 124
>10_08_0672 +
19762340-19762432,19762543-19762735,19763225-19763269,
19763381-19763432,19763601-19763704,19763887-19763987,
19764225-19764283,19764536-19764592,19764944-19764989,
19765187-19765266,19766841-19767096,19767210-19767405,
19768368-19768448,19768536-19768587,19768759-19768862,
19769586-19769686,19769924-19769982,19770491-19770536,
19770789-19770868,19770953-19771013
Length = 621
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 24 KDLNFLQNLNRIKVAEDILAWVN--FNGTLMKCIVAGDETGDDVVDMHTGQQVLERCLST 81
+D++ ++ + + + + W N F TL + + G E +HT ++ +CL +
Sbjct: 209 EDVHHIEGALIVNIGDLLQRWTNCVFRSTLHRVVAVGKERYSVAFFLHTNPDLVVQCLES 268
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 22 VPKDLNFLQNLNRIKVAEDILAWVNFNGTLMK 53
+P D+NFL NL + + +A +N G L K
Sbjct: 711 LPGDMNFLINLRHLHASSGTIAQINGIGKLTK 742
>10_05_0095 + 9140375-9140676,9140895-9141123,9141444-9141488
Length = 191
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 41 ILAWVNFNGTLMKCIVAGDETGDDVVDMHTGQ 72
IL W FNG+ ++ + ETG+ + TGQ
Sbjct: 108 ILKWYRFNGSKLQVMGTTPETGEWAIVGGTGQ 139
>12_02_1081 + 25914180-25914371,25918121-25919104
Length = 391
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 22 VPKDLNFLQNLNRIKVA 38
+PK L+FL+N+NR A
Sbjct: 154 IPKSLSFLENINRFAFA 170
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 61 TGDDVVDMHTGQQVLERCLSTEEKL 85
T DD+VD G+Q+ E C + E L
Sbjct: 112 TNDDIVDCSHGKQLWELCQNKYEPL 136
>11_05_0007 -
18324969-18325063,18326580-18326745,18327078-18327275,
18327377-18327643,18328070-18328129,18328767-18329033,
18329156-18329359,18329441-18331496,18332517-18333358
Length = 1384
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 21 LVPKDLNFLQNLNRIKVAEDILAWVNFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCLS 80
++ K + L+++ + +DI W L+KC++ ++ G ++ V + C
Sbjct: 269 IIDKIRDILKDIRYFIIIDDI--WDKPTWQLLKCVLIDNDHGSKIITTTRNMDVAKLCCY 326
Query: 81 TEE 83
+++
Sbjct: 327 SDD 329
>03_02_0277 +
7056341-7056391,7056681-7056764,7057107-7057223,
7057335-7057772,7057889-7058295,7058371-7058470,
7058707-7058793,7059056-7059544
Length = 590
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 31 NLNRIKVAEDILAWVNFNGTLM---KCIVAGDETGDDVVDMH 69
+LN +K E I W+N + +M +++G ++++ H
Sbjct: 376 DLNGMKNEEKIAFWINVHNAMMMHLSYLISGQRVNPELIEYH 417
>11_05_0010 -
18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 21 LVPKDLNFLQNLNRIKVAEDILAWVNFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCLS 80
++ K + L+++ + +DI W L+KC++ ++ G ++ V + C
Sbjct: 277 IIDKIRDVLKDIRYFIIIDDI--WDKPTWQLLKCVLIDNDHGSKIITTTRNMDVAKLCCY 334
Query: 81 TEE 83
+++
Sbjct: 335 SDD 337
>08_02_1422 - 26971803-26971900,26974083-26975061
Length = 358
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 35 IKVAEDILAWVNFNGTLMKCIVAGDETG 62
I +AE +L WV+ + +M C + D G
Sbjct: 203 ITIAEGVLGWVDLDHGVMVCDLREDVPG 230
>06_03_0593 +
22596372-22596384,22596856-22597037,22597119-22597344,
22597429-22597855,22598075-22598429,22598511-22599089
Length = 593
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 9 GCLYHIKHVTARLVPKDLNFLQNL 32
GC YH+K R P D L NL
Sbjct: 162 GCRYHLKEYDRRNYPHDSRELFNL 185
>01_06_1143 -
34862005-34862370,34862494-34862628,34862742-34862992,
34863192-34863243,34863408-34863694,34864030-34864182,
34865393-34865889,34866173-34866241,34867006-34867074,
34867486-34867560,34869341-34869412,34869499-34869570,
34869664-34869807,34870321-34870416,34870736-34870807,
34871081-34871152,34871683-34871830,34872609-34872708
Length = 909
Score = 24.6 bits (51), Expect = 9.9
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 22 VPKDLNFLQNLNRIKVAED 40
+P ++ +LQNLNR+++ ++
Sbjct: 174 LPDEIGYLQNLNRLQIDQN 192
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.137 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,089
Number of Sequences: 37544
Number of extensions: 94592
Number of successful extensions: 182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 14
length of query: 89
length of database: 14,793,348
effective HSP length: 68
effective length of query: 21
effective length of database: 12,240,356
effective search space: 257047476
effective search space used: 257047476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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